Wall clock time and date at job start Mon Mar 30 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99840 * 3 2 1 5 5 H 1.48496 * 109.47309 * 30.00176 * 3 2 1 6 6 H 1.48507 * 109.47212 * 150.00076 * 3 2 1 7 7 C 1.37877 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.88819 * 303.81815 * 9 7 2 11 11 C 1.54739 * 110.97045 * 180.02562 * 9 7 2 12 12 C 1.51695 * 102.72750 * 266.21751 * 11 9 7 13 13 C 1.47523 * 125.86897 * 164.53000 * 12 11 9 14 14 C 1.39702 * 120.09262 * 359.71754 * 13 12 11 15 15 C 1.37787 * 119.90537 * 179.76694 * 14 13 12 16 16 C 1.38921 * 120.09133 * 0.51710 * 15 14 13 17 17 O 1.35806 * 119.90454 * 179.76607 * 16 15 14 18 18 C 1.38917 * 120.18745 * 359.73725 * 16 15 14 19 19 C 1.37788 * 120.09181 * 0.02562 * 18 16 15 20 20 N 1.29149 * 108.25856 * 344.50813 * 12 11 9 21 21 O 1.41395 * 112.86029 * 359.68207 * 20 12 11 22 22 H 0.97010 * 119.99648 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.79207 * 147.85487 * 11 9 7 24 24 H 1.08996 * 110.78960 * 24.57951 * 11 9 7 25 25 H 1.07994 * 120.04777 * 0.02562 * 14 13 12 26 26 H 1.07992 * 119.95409 * 180.25918 * 15 14 13 27 27 H 0.96698 * 113.99885 * 269.97370 * 17 16 15 28 28 H 1.08006 * 119.95599 * 180.02562 * 18 16 15 29 29 H 1.07997 * 120.04400 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.5660 -2.5525 0.8458 11 6 2.2252 -3.7012 -0.0005 12 6 2.3598 -4.0223 -1.4770 13 6 3.4044 -4.8675 -2.0861 14 6 4.3903 -5.4489 -1.2850 15 6 5.3612 -6.2415 -1.8573 16 6 5.3670 -6.4540 -3.2302 17 8 6.3286 -7.2320 -3.7909 18 6 4.3916 -5.8734 -4.0310 19 6 3.4142 -5.0834 -3.4661 20 7 1.4025 -3.4290 -2.1090 21 8 0.5508 -2.6946 -1.2520 22 1 -0.4850 0.8402 -0.0004 23 1 1.7986 -4.5451 0.5417 24 1 3.1887 -3.4183 0.4233 25 1 4.3889 -5.2808 -0.2183 26 1 6.1213 -6.6948 -1.2384 27 1 7.1195 -6.7460 -4.0615 28 1 4.3994 -6.0415 -5.0979 29 1 2.6565 -4.6321 -4.0895 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259915045.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:43 Heat of formation + Delta-G solvation = -3.238717 kcal Electronic energy + Delta-G solvation = -15411.241927 eV Core-core repulsion = 12687.407480 eV Total energy + Delta-G solvation = -2723.834447 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75945 -38.57945 -36.64165 -32.95231 -32.03334 -31.11513 -29.54256 -28.74754 -25.37703 -23.04142 -22.69888 -20.90999 -19.38859 -18.46307 -17.05166 -15.96627 -15.53029 -15.32904 -14.75438 -14.63024 -14.04827 -13.74223 -13.44005 -12.91343 -12.60594 -12.21323 -12.02313 -11.77755 -11.27158 -11.00794 -10.95472 -10.66396 -10.51318 -10.09947 -9.75302 -9.62724 -9.00310 -8.77683 -8.65442 -7.72331 -6.17148 -4.33319 0.93188 1.39403 2.81972 3.23829 3.30279 3.32262 3.84697 4.17597 4.20244 4.31800 4.77053 4.95638 5.01265 5.13933 5.39286 5.54173 5.72348 5.84372 5.95993 6.05201 6.05772 6.15623 6.39858 6.49314 6.68061 6.78091 7.01838 7.23258 7.55564 7.71597 7.97781 8.52204 8.77569 9.40584 10.89825 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.005879 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.804655 B = 4761.266795 C = 4971.689435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.080 3.920 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.174 3.826 10 H 0.078 0.922 11 C -0.138 4.138 12 C 0.077 3.923 13 C -0.017 4.017 14 C -0.080 4.080 15 C -0.146 4.146 16 C 0.102 3.898 17 O -0.501 6.501 18 C -0.146 4.146 19 C -0.075 4.075 20 N -0.286 5.286 21 O -0.178 6.178 22 H 0.266 0.734 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.388 0.612 28 H 0.130 0.870 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -10.544 -3.476 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.127 4.127 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.081 0.919 9 C 0.119 3.881 10 H 0.096 0.904 11 C -0.177 4.177 12 C -0.111 4.111 13 C -0.018 4.018 14 C -0.100 4.100 15 C -0.165 4.165 16 C 0.057 3.943 17 O -0.311 6.311 18 C -0.165 4.165 19 C -0.095 4.095 20 N -0.022 5.022 21 O -0.205 6.205 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.152 0.848 26 H 0.148 0.852 27 H 0.244 0.756 28 H 0.148 0.852 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.535 -10.602 -4.353 14.908 hybrid contribution 1.153 1.289 0.774 1.895 sum 10.688 -9.312 -3.580 14.621 Atomic orbital electron populations 1.69995 1.06161 1.27303 1.46550 1.25071 0.94834 0.99621 0.93139 0.86508 0.79851 0.82722 0.78425 1.20313 1.20849 1.19610 1.21264 0.92986 0.90203 1.54462 0.91902 1.21410 0.90087 0.91603 0.85039 0.90449 1.23047 1.02811 0.99501 0.92371 1.23869 0.95731 0.96667 0.94871 1.18023 0.93847 0.97045 0.92935 1.21144 0.93068 0.95610 1.00211 1.21268 1.00586 1.00193 0.94427 1.18579 0.91366 0.93390 0.91004 1.84786 1.29092 1.36072 1.81199 1.21320 0.96338 0.98494 1.00330 1.21268 0.97819 0.96366 0.94073 1.77895 1.01609 1.02068 1.20623 1.91384 1.33952 1.68777 1.26362 0.92426 0.90872 0.89478 0.84849 0.85183 0.75595 0.85240 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.22 55.43 0.73 -24.76 15 2 C 0.08 2.26 5.46 -17.82 -0.10 2.16 15 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.55 -15.31 8.82 -34.44 -0.30 -15.61 15 8 H 0.06 1.70 7.62 -52.49 -0.40 1.30 15 9 C 0.17 4.50 3.55 -26.97 -0.10 4.40 15 10 H 0.08 2.05 8.14 -51.93 -0.42 1.63 15 11 C -0.14 -2.82 5.79 -26.48 -0.15 -2.97 15 12 C 0.08 1.59 7.15 -79.45 -0.57 1.02 15 13 C -0.02 -0.29 5.87 -105.02 -0.62 -0.91 15 14 C -0.08 -1.10 9.60 -39.20 -0.38 -1.48 15 15 C -0.15 -1.75 9.97 -39.49 -0.39 -2.14 15 16 C 0.10 1.23 6.71 -39.08 -0.26 0.97 15 17 O -0.50 -5.12 13.49 -19.13 -0.26 -5.38 15 18 C -0.15 -1.86 9.97 -39.49 -0.39 -2.26 15 19 C -0.08 -1.15 9.68 -39.20 -0.38 -1.52 15 20 N -0.29 -6.90 12.11 35.28 0.43 -6.47 15 21 O -0.18 -4.94 12.16 -11.37 -0.14 -5.08 15 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 23 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.09 1.64 7.57 -51.93 -0.39 1.25 15 25 H 0.13 1.62 7.35 -52.49 -0.39 1.24 15 26 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 27 H 0.39 2.05 9.06 45.56 0.41 2.47 15 28 H 0.13 1.37 8.06 -52.48 -0.42 0.95 15 29 H 0.14 2.11 7.83 -52.49 -0.41 1.69 15 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -32.80 264.55 -5.91 -38.71 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.00 Total: 1.06 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.64 Total: -18.33 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 1.16 Total: -31.24 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.40 Total: -10.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.80 -5.91 -38.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915045.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.476 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds