Wall clock time and date at job start Mon Mar 30 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99840 * 3 2 1 5 5 H 1.48496 * 109.47309 * 30.00176 * 3 2 1 6 6 H 1.48507 * 109.47212 * 150.00076 * 3 2 1 7 7 C 1.37877 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.88819 * 303.81815 * 9 7 2 11 11 C 1.54739 * 110.97045 * 180.02562 * 9 7 2 12 12 C 1.51695 * 102.72750 * 266.21751 * 11 9 7 13 13 C 1.47523 * 125.86897 * 164.53000 * 12 11 9 14 14 C 1.39702 * 120.09262 * 359.71754 * 13 12 11 15 15 C 1.37787 * 119.90537 * 179.76694 * 14 13 12 16 16 C 1.38921 * 120.09133 * 0.51710 * 15 14 13 17 17 O 1.35806 * 119.90454 * 179.76607 * 16 15 14 18 18 C 1.38917 * 120.18745 * 359.73725 * 16 15 14 19 19 C 1.37788 * 120.09181 * 0.02562 * 18 16 15 20 20 N 1.29149 * 108.25856 * 344.50813 * 12 11 9 21 21 O 1.41395 * 112.86029 * 359.68207 * 20 12 11 22 22 H 0.97010 * 119.99648 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.79207 * 147.85487 * 11 9 7 24 24 H 1.08996 * 110.78960 * 24.57951 * 11 9 7 25 25 H 1.07994 * 120.04777 * 0.02562 * 14 13 12 26 26 H 1.07992 * 119.95409 * 180.25918 * 15 14 13 27 27 H 0.96698 * 113.99885 * 269.97370 * 17 16 15 28 28 H 1.08006 * 119.95599 * 180.02562 * 18 16 15 29 29 H 1.07997 * 120.04400 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.5660 -2.5525 0.8458 11 6 2.2252 -3.7012 -0.0005 12 6 2.3598 -4.0223 -1.4770 13 6 3.4044 -4.8675 -2.0861 14 6 4.3903 -5.4489 -1.2850 15 6 5.3612 -6.2415 -1.8573 16 6 5.3670 -6.4540 -3.2302 17 8 6.3286 -7.2320 -3.7909 18 6 4.3916 -5.8734 -4.0310 19 6 3.4142 -5.0834 -3.4661 20 7 1.4025 -3.4290 -2.1090 21 8 0.5508 -2.6946 -1.2520 22 1 -0.4850 0.8402 -0.0004 23 1 1.7986 -4.5451 0.5417 24 1 3.1887 -3.4183 0.4233 25 1 4.3889 -5.2808 -0.2183 26 1 6.1213 -6.6948 -1.2384 27 1 7.1195 -6.7460 -4.0615 28 1 4.3994 -6.0415 -5.0979 29 1 2.6565 -4.6321 -4.0895 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915045.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:43 Heat of formation + Delta-G solvation = -27.003042 kcal Electronic energy + Delta-G solvation = -15412.272426 eV Core-core repulsion = 12687.407480 eV Total energy + Delta-G solvation = -2724.864946 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.96948 -40.09196 -37.66372 -34.95375 -33.69113 -32.22313 -31.33286 -30.02198 -27.37407 -24.25932 -23.88383 -22.65375 -20.81256 -19.35659 -19.00169 -17.46470 -16.84204 -16.54221 -16.37194 -16.13167 -15.71970 -15.06847 -14.47517 -14.40764 -14.25941 -13.80147 -13.32647 -13.02034 -12.96590 -12.83228 -12.66097 -12.42531 -11.85399 -11.70850 -11.52215 -11.25438 -10.78965 -10.32436 -10.01898 -9.23394 -8.27342 -6.51365 -0.23949 0.37845 1.35362 1.37410 1.41606 1.48657 2.32510 2.50486 2.75353 3.03845 3.25270 3.34323 3.86565 4.01041 4.12067 4.14792 4.36949 4.45565 4.55537 4.74226 4.86922 5.04752 5.10254 5.21251 5.38876 5.45928 5.53236 5.60175 5.78898 5.92355 6.55659 6.83695 6.88327 7.27150 8.80386 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.005879 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.804655 B = 4761.266795 C = 4971.689435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.566 4.566 8 H 0.067 0.933 9 C 0.160 3.840 10 H 0.054 0.946 11 C -0.129 4.129 12 C 0.111 3.889 13 C -0.059 4.059 14 C -0.069 4.069 15 C -0.143 4.143 16 C 0.124 3.876 17 O -0.504 6.504 18 C -0.149 4.149 19 C -0.081 4.081 20 N -0.332 5.332 21 O -0.231 6.231 22 H 0.267 0.733 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.151 0.849 26 H 0.162 0.838 27 H 0.415 0.585 28 H 0.150 0.850 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.272 -11.981 -3.555 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.604 4.604 8 H 0.085 0.915 9 C 0.104 3.896 10 H 0.072 0.928 11 C -0.168 4.168 12 C -0.078 4.078 13 C -0.061 4.061 14 C -0.089 4.089 15 C -0.161 4.161 16 C 0.078 3.922 17 O -0.318 6.318 18 C -0.168 4.168 19 C -0.101 4.101 20 N -0.073 5.073 21 O -0.253 6.253 22 H 0.076 0.924 23 H 0.120 0.880 24 H 0.126 0.874 25 H 0.168 0.832 26 H 0.180 0.820 27 H 0.275 0.725 28 H 0.168 0.832 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.991 -12.024 -4.415 18.244 hybrid contribution 0.294 1.478 0.707 1.664 sum 13.285 -10.546 -3.708 17.363 Atomic orbital electron populations 1.70137 1.07921 1.28163 1.48131 1.26024 0.95679 1.03556 0.92758 0.85425 0.79073 0.78099 0.78264 1.20579 1.20078 1.17875 1.21653 0.93307 0.91481 1.53928 0.91524 1.21373 0.90687 0.93352 0.84180 0.92816 1.22983 1.02567 0.98383 0.92908 1.24534 0.94371 0.94024 0.94829 1.18065 0.94732 0.99336 0.93918 1.21343 0.92036 0.94682 1.00819 1.21574 1.00471 0.99354 0.94721 1.18683 0.91014 0.91351 0.91148 1.84727 1.29844 1.36212 1.81030 1.21494 0.95738 0.97950 1.01587 1.21250 0.98310 0.96957 0.93604 1.77918 1.03855 1.05437 1.20120 1.91302 1.36151 1.70596 1.27207 0.92432 0.87987 0.87378 0.83168 0.82022 0.72513 0.83195 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.60 13.22 21.45 0.28 -55.32 15 2 C 0.02 1.28 5.46 84.65 0.46 1.75 15 3 Si 0.97 44.23 29.54 68.60 2.03 46.25 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 7 C -0.57 -32.09 8.82 25.60 0.23 -31.86 15 8 H 0.07 3.60 7.62 -2.91 -0.02 3.58 15 9 C 0.16 8.57 3.55 30.44 0.11 8.68 15 10 H 0.05 3.03 8.14 -2.39 -0.02 3.01 15 11 C -0.13 -5.22 5.79 30.76 0.18 -5.04 15 12 C 0.11 4.58 7.15 45.72 0.33 4.91 15 13 C -0.06 -1.88 5.87 -20.12 -0.12 -2.00 15 14 C -0.07 -1.65 9.60 22.52 0.22 -1.43 15 15 C -0.14 -2.74 9.97 22.33 0.22 -2.52 15 16 C 0.12 2.45 6.71 22.60 0.15 2.60 15 17 O -0.50 -7.73 13.49 -91.37 -1.23 -8.97 15 18 C -0.15 -3.36 9.97 22.33 0.22 -3.14 15 19 C -0.08 -2.38 9.68 22.51 0.22 -2.16 15 20 N -0.33 -16.67 12.11 -42.28 -0.51 -17.18 15 21 O -0.23 -13.54 12.16 -38.32 -0.47 -14.00 15 22 H 0.27 15.34 8.31 -92.70 -0.77 14.57 15 23 H 0.10 3.52 8.14 -2.39 -0.02 3.50 15 24 H 0.11 3.88 7.57 -2.39 -0.02 3.86 15 25 H 0.15 3.04 7.35 -2.91 -0.02 3.02 15 26 H 0.16 2.13 8.06 -2.91 -0.02 2.11 15 27 H 0.41 2.16 9.06 -74.06 -0.67 1.49 15 28 H 0.15 2.70 8.06 -2.91 -0.02 2.68 15 29 H 0.12 3.83 7.83 -2.91 -0.02 3.81 15 Total: -1.00 -74.33 264.55 2.82 -71.51 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.51 Total: 7.94 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 2.21 Total: -30.23 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -0.23 Total: -72.50 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.70 Total: -22.97 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -74.33 2.82 -71.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915045.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.505 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds