Wall clock time and date at job start Mon Mar 30 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.50707 * 109.47163 * 180.02562 * 9 7 2 13 13 C 1.34181 * 125.04228 * 84.69053 * 12 9 7 14 14 C 1.46565 * 107.00750 * 179.86171 * 13 12 9 15 15 C 1.39649 * 133.93745 * 180.10808 * 14 13 12 16 16 C 1.36558 * 119.83612 * 180.31951 * 15 14 13 17 17 C 1.39278 * 120.47590 * 359.97438 * 16 15 14 18 18 O 1.35952 * 119.72468 * 180.02562 * 17 16 15 19 19 C 1.38201 * 120.54695 * 0.02562 * 17 16 15 20 20 C 1.39101 * 119.73595 * 359.96626 * 19 17 16 21 21 N 1.36963 * 125.03457 * 265.00144 * 12 9 7 22 22 H 0.96996 * 125.07393 * 359.96718 * 21 12 9 23 23 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 25 25 H 1.07997 * 126.49709 * 0.02562 * 13 12 9 26 26 H 1.07994 * 120.07863 * 0.30277 * 15 14 13 27 27 H 1.08004 * 119.76134 * 180.02562 * 16 15 14 28 28 H 0.96703 * 113.99545 * 90.00828 * 18 17 16 29 29 H 1.07997 * 120.13169 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0139 -2.6149 -0.0013 13 6 4.1754 -3.3739 -1.0960 14 6 4.6826 -4.6732 -0.6458 15 6 5.0397 -5.8538 -1.3007 16 6 5.4846 -6.9237 -0.5781 17 6 5.5856 -6.8466 0.8089 18 8 6.0309 -7.9208 1.5132 19 6 5.2370 -5.6870 1.4752 20 6 4.7820 -4.5875 0.7547 21 7 4.3678 -3.3248 1.1152 22 1 4.3327 -2.9881 2.0241 23 1 -0.4850 0.8400 -0.0004 24 1 3.7033 -0.9227 -1.9977 25 1 3.9728 -3.0818 -2.1158 26 1 4.9640 -5.9205 -2.3759 27 1 5.7609 -7.8360 -1.0858 28 1 6.9894 -7.9379 1.6402 29 1 5.3183 -5.6344 2.5508 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:27 Heat of formation + Delta-G solvation = -38.109713 kcal Electronic energy + Delta-G solvation = -15534.570898 eV Core-core repulsion = 12809.224331 eV Total energy + Delta-G solvation = -2725.346567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91944 -38.40279 -36.31529 -34.91573 -32.45341 -31.30979 -29.34530 -28.63815 -26.63340 -23.33806 -21.88146 -21.24812 -19.64443 -18.26707 -17.74945 -16.79159 -15.91354 -15.28979 -15.02358 -14.52444 -14.03335 -13.92262 -13.76292 -13.29288 -13.01746 -12.62633 -12.10529 -11.72866 -11.42056 -11.26046 -11.00640 -10.76292 -10.39076 -10.10683 -9.51957 -9.31880 -8.90896 -8.81559 -7.78601 -7.19974 -6.28459 -4.43764 1.33548 1.80416 3.22119 3.32964 3.37445 3.45637 3.48734 4.03382 4.34080 4.45997 4.97947 5.01351 5.21422 5.40952 5.60294 5.65916 5.68311 5.89141 6.00439 6.26802 6.33846 6.59709 6.63991 6.75735 6.96818 7.26769 7.30548 7.54018 7.77795 7.95102 8.12737 8.60918 8.80005 9.30537 10.81024 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.053345 B = 0.005935 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.758190 B = 4716.723345 C = 4801.384040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.275 1.275 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.246 3.754 10 H 0.071 0.929 11 O -0.573 6.573 12 C 0.114 3.886 13 C -0.218 4.218 14 C -0.104 4.104 15 C -0.061 4.061 16 C -0.174 4.174 17 C 0.104 3.896 18 O -0.500 6.500 19 C -0.154 4.154 20 C 0.103 3.897 21 N -0.586 5.586 22 H 0.414 0.586 23 H 0.269 0.731 24 H 0.369 0.631 25 H 0.144 0.856 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.383 0.617 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.717 -8.915 0.454 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.120 4.120 3 Si 0.742 3.258 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.097 0.903 9 C 0.188 3.812 10 H 0.088 0.912 11 O -0.379 6.379 12 C 0.005 3.995 13 C -0.242 4.242 14 C -0.109 4.109 15 C -0.079 4.079 16 C -0.194 4.194 17 C 0.059 3.941 18 O -0.309 6.309 19 C -0.175 4.175 20 C -0.005 4.005 21 N -0.190 5.190 22 H 0.250 0.750 23 H 0.079 0.921 24 H 0.217 0.783 25 H 0.161 0.839 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.237 0.763 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.206 -8.492 1.009 14.097 hybrid contribution 0.428 0.612 0.135 0.759 sum 11.634 -7.880 1.144 14.098 Atomic orbital electron populations 1.69936 1.06613 1.27811 1.47515 1.25019 0.94764 0.99875 0.92388 0.86262 0.79061 0.81594 0.78874 1.20034 1.23012 1.19345 1.21340 0.88256 0.95358 1.54795 0.90291 1.18611 0.94053 0.81799 0.86739 0.91161 1.86429 1.77790 1.57016 1.16708 1.21790 0.95789 0.96734 0.85188 1.21222 1.12484 0.92153 0.98338 1.19305 1.04270 0.95212 0.92136 1.20091 0.97481 0.90988 0.99351 1.20730 1.06421 0.99318 0.92964 1.17854 1.00942 0.85847 0.89444 1.84846 1.27402 1.43173 1.75504 1.20092 1.06995 0.91131 0.99292 1.17973 1.01857 0.86620 0.94061 1.41809 1.57513 1.10514 1.09159 0.74965 0.92143 0.78346 0.83877 0.85877 0.85984 0.76265 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.96 55.43 0.77 -25.12 15 2 C 0.09 2.36 5.47 -17.82 -0.10 2.26 15 3 Si 0.91 21.95 26.18 -169.99 -4.45 17.50 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 15 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 15 7 C -0.56 -14.93 9.33 -34.44 -0.32 -15.25 15 8 H 0.08 2.34 7.98 -52.49 -0.42 1.92 15 9 C 0.25 5.54 2.82 -29.03 -0.08 5.46 15 10 H 0.07 1.59 7.20 -51.93 -0.37 1.21 15 11 O -0.57 -12.39 10.89 -35.23 -0.38 -12.78 15 12 C 0.11 2.29 6.10 -81.73 -0.50 1.80 15 13 C -0.22 -4.16 10.37 -37.66 -0.39 -4.55 15 14 C -0.10 -1.86 6.37 -105.10 -0.67 -2.53 15 15 C -0.06 -0.91 10.05 -39.66 -0.40 -1.31 15 16 C -0.17 -2.43 9.91 -39.80 -0.39 -2.82 15 17 C 0.10 1.49 6.69 -39.21 -0.26 1.23 15 18 O -0.50 -6.07 13.49 -19.59 -0.26 -6.34 15 19 C -0.15 -2.34 10.01 -39.27 -0.39 -2.73 15 20 C 0.10 1.80 7.27 -84.00 -0.61 1.19 15 21 N -0.59 -10.49 6.08 -6.94 -0.04 -10.53 15 22 H 0.41 6.34 8.96 -40.82 -0.37 5.98 15 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 24 H 0.37 6.94 8.09 45.56 0.37 7.31 15 25 H 0.14 2.47 7.49 -52.49 -0.39 2.08 15 26 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 15 28 H 0.38 2.65 9.06 45.56 0.41 3.06 15 29 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -31.93 257.00 -5.82 -37.75 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.21 Total: 12.91 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -4.12 Total: -17.28 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.73 Total: -35.65 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.65 Total: -19.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.45 Total: 17.50 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.93 -5.82 -37.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.358 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds