Wall clock time and date at job start Mon Mar 30 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.50707 * 109.47163 * 180.02562 * 9 7 2 13 13 C 1.34181 * 125.04228 * 84.69053 * 12 9 7 14 14 C 1.46565 * 107.00750 * 179.86171 * 13 12 9 15 15 C 1.39649 * 133.93745 * 180.10808 * 14 13 12 16 16 C 1.36558 * 119.83612 * 180.31951 * 15 14 13 17 17 C 1.39278 * 120.47590 * 359.97438 * 16 15 14 18 18 O 1.35952 * 119.72468 * 180.02562 * 17 16 15 19 19 C 1.38201 * 120.54695 * 0.02562 * 17 16 15 20 20 C 1.39101 * 119.73595 * 359.96626 * 19 17 16 21 21 N 1.36963 * 125.03457 * 265.00144 * 12 9 7 22 22 H 0.96996 * 125.07393 * 359.96718 * 21 12 9 23 23 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 25 25 H 1.07997 * 126.49709 * 0.02562 * 13 12 9 26 26 H 1.07994 * 120.07863 * 0.30277 * 15 14 13 27 27 H 1.08004 * 119.76134 * 180.02562 * 16 15 14 28 28 H 0.96703 * 113.99545 * 90.00828 * 18 17 16 29 29 H 1.07997 * 120.13169 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0139 -2.6149 -0.0013 13 6 4.1754 -3.3739 -1.0960 14 6 4.6826 -4.6732 -0.6458 15 6 5.0397 -5.8538 -1.3007 16 6 5.4846 -6.9237 -0.5781 17 6 5.5856 -6.8466 0.8089 18 8 6.0309 -7.9208 1.5132 19 6 5.2370 -5.6870 1.4752 20 6 4.7820 -4.5875 0.7547 21 7 4.3678 -3.3248 1.1152 22 1 4.3327 -2.9881 2.0241 23 1 -0.4850 0.8400 -0.0004 24 1 3.7033 -0.9227 -1.9977 25 1 3.9728 -3.0818 -2.1158 26 1 4.9640 -5.9205 -2.3759 27 1 5.7609 -7.8360 -1.0858 28 1 6.9894 -7.9379 1.6402 29 1 5.3183 -5.6344 2.5508 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259929739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:27 Heat of formation + Delta-G solvation = -63.750383 kcal Electronic energy + Delta-G solvation = -15535.682761 eV Core-core repulsion = 12809.224331 eV Total energy + Delta-G solvation = -2726.458430 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22753 -39.54370 -37.92663 -36.14036 -34.54024 -32.59484 -30.80940 -30.07994 -28.20540 -24.99409 -23.20567 -22.51308 -21.10382 -19.64040 -19.39528 -18.29570 -17.15661 -16.96755 -16.46662 -15.83574 -15.51754 -15.41219 -15.11750 -14.89616 -14.49304 -14.10164 -13.80860 -13.19442 -13.09806 -12.81933 -12.47141 -12.17195 -11.88447 -11.50179 -11.41430 -10.92561 -10.82440 -10.51187 -9.04499 -8.55020 -8.40630 -6.59890 0.12820 0.62674 1.41239 1.44434 1.57346 1.78855 2.14758 2.33710 2.85257 2.93291 3.42261 3.78464 3.90784 3.93070 4.25807 4.37050 4.45985 4.61012 4.74304 4.93591 5.04718 5.16792 5.28742 5.45482 5.55885 5.77763 5.93959 6.00692 6.17952 6.52450 6.66380 6.94199 6.99868 7.19861 8.72547 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.053345 B = 0.005935 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.758190 B = 4716.723345 C = 4801.384040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.035 3.965 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.300 1.300 6 H -0.258 1.258 7 C -0.558 4.558 8 H 0.036 0.964 9 C 0.258 3.742 10 H 0.071 0.929 11 O -0.574 6.574 12 C 0.082 3.918 13 C -0.220 4.220 14 C -0.135 4.135 15 C -0.061 4.061 16 C -0.172 4.172 17 C 0.119 3.881 18 O -0.504 6.504 19 C -0.167 4.167 20 C 0.091 3.909 21 N -0.587 5.587 22 H 0.421 0.579 23 H 0.272 0.728 24 H 0.380 0.620 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.409 0.591 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 -10.043 0.324 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.166 4.166 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.228 1.228 6 H -0.183 1.183 7 C -0.596 4.596 8 H 0.054 0.946 9 C 0.199 3.801 10 H 0.089 0.911 11 O -0.381 6.381 12 C -0.027 4.027 13 C -0.244 4.244 14 C -0.140 4.140 15 C -0.080 4.080 16 C -0.191 4.191 17 C 0.073 3.927 18 O -0.317 6.317 19 C -0.189 4.189 20 C -0.016 4.016 21 N -0.191 5.191 22 H 0.259 0.741 23 H 0.081 0.919 24 H 0.230 0.770 25 H 0.170 0.830 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.268 0.732 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.312 -9.641 0.887 16.460 hybrid contribution -0.159 0.707 0.175 0.746 sum 13.153 -8.934 1.061 15.935 Atomic orbital electron populations 1.70055 1.08349 1.28824 1.49683 1.25830 0.95337 1.03327 0.92108 0.85264 0.78027 0.77411 0.79040 1.19562 1.22818 1.18255 1.21509 0.90730 0.93507 1.53813 0.94595 1.18220 0.91193 0.83670 0.86974 0.91139 1.86355 1.77458 1.57189 1.17081 1.21403 0.98513 0.96192 0.86581 1.21495 1.11537 0.92873 0.98533 1.19546 1.05999 0.95773 0.92700 1.20400 0.96625 0.90233 1.00692 1.21076 1.05181 0.99937 0.92940 1.17990 0.99295 0.85628 0.89787 1.84780 1.29871 1.41934 1.75093 1.20325 1.07347 0.90933 1.00250 1.18282 1.02135 0.86764 0.94452 1.41734 1.57610 1.10756 1.09037 0.74130 0.91909 0.77001 0.83017 0.83667 0.83051 0.73158 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.96 21.45 0.30 -55.76 15 2 C 0.04 1.97 5.47 84.65 0.46 2.43 15 3 Si 0.98 45.25 26.18 68.60 1.80 47.05 15 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 5 H -0.30 -13.73 7.11 99.48 0.71 -13.03 15 6 H -0.26 -11.45 6.54 99.48 0.65 -10.80 15 7 C -0.56 -30.53 9.33 25.60 0.24 -30.29 15 8 H 0.04 2.23 7.98 -2.92 -0.02 2.20 15 9 C 0.26 11.63 2.82 29.10 0.08 11.71 15 10 H 0.07 3.15 7.20 -2.39 -0.02 3.14 15 11 O -0.57 -24.25 10.89 -148.98 -1.62 -25.87 15 12 C 0.08 3.33 6.10 40.83 0.25 3.58 15 13 C -0.22 -8.36 10.37 23.52 0.24 -8.12 15 14 C -0.14 -4.69 6.37 -20.17 -0.13 -4.82 15 15 C -0.06 -1.70 10.05 22.22 0.22 -1.47 15 16 C -0.17 -4.18 9.91 22.13 0.22 -3.96 15 17 C 0.12 3.01 6.69 22.51 0.15 3.16 15 18 O -0.50 -10.27 13.49 -93.01 -1.25 -11.53 15 19 C -0.17 -4.76 10.01 22.47 0.22 -4.53 15 20 C 0.09 3.11 7.27 39.02 0.28 3.40 15 21 N -0.59 -21.01 6.08 -175.87 -1.07 -22.08 15 22 H 0.42 13.00 8.96 -92.71 -0.83 12.17 15 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 24 H 0.38 14.06 8.09 -74.06 -0.60 13.46 15 25 H 0.15 5.22 7.49 -2.91 -0.02 5.19 15 26 H 0.15 3.28 8.06 -2.91 -0.02 3.25 15 27 H 0.15 2.78 8.06 -2.91 -0.02 2.76 15 28 H 0.41 3.93 9.06 -74.06 -0.67 3.26 15 29 H 0.14 3.34 8.06 -2.91 -0.02 3.32 15 Total: -1.00 -68.72 257.00 -0.54 -69.26 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.94 Total: 27.84 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 2.25 Total: -28.92 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -0.77 Total: -77.84 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -2.88 Total: -37.40 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.80 Total: 47.05 kcal Total: -68.72 -0.54 -69.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.511 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds