Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47305 * 240.00271 * 3 2 1 5 5 H 1.48504 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47357 * 119.99774 * 3 2 1 7 7 C 1.40218 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.41263 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.30633 * 123.22355 * 0.03320 * 9 7 2 11 11 C 1.47652 * 108.35172 * 180.63468 * 10 9 7 12 12 C 1.54789 * 102.07612 * 14.93772 * 11 10 9 13 13 H 1.08988 * 111.02077 * 94.45067 * 12 11 10 14 14 C 1.50707 * 111.01698 * 218.30263 * 12 11 10 15 15 C 1.38264 * 119.94209 * 261.78262 * 14 12 11 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 12 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.38735 * 119.88958 * 359.47324 * 17 16 15 20 20 C 1.38137 * 119.94094 * 0.54351 * 19 17 16 21 21 O 1.35191 * 123.22479 * 179.97438 * 9 7 2 22 22 H 0.96996 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.89530 * 256.75429 * 11 10 9 24 24 H 1.09004 * 110.93886 * 133.13128 * 11 10 9 25 25 H 1.07999 * 119.97244 * 359.97438 * 15 14 12 26 26 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 27 27 H 0.96695 * 113.99480 * 90.00320 * 18 17 16 28 28 H 1.07992 * 120.02678 * 180.25528 * 19 17 16 29 29 H 1.08007 * 119.97477 * 179.72701 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7464 0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0010 9 6 1.3008 -2.4377 -0.0005 10 7 -0.0035 -2.5112 -0.0007 11 6 -0.3888 -3.9364 0.0149 12 6 0.9382 -4.6263 0.4137 13 1 0.9847 -4.7918 1.4900 14 6 1.1221 -5.9198 -0.3376 15 6 0.7923 -7.1202 0.2640 16 6 0.9604 -8.3072 -0.4223 17 6 1.4656 -8.2945 -1.7144 18 8 1.6367 -9.4614 -2.3897 19 6 1.7903 -7.0882 -2.3178 20 6 1.6207 -5.9040 -1.6271 21 8 1.9098 -3.6446 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 -0.7148 -4.2618 -0.9730 24 1 -1.1629 -4.1226 0.7594 25 1 0.4038 -7.1299 1.2717 26 1 0.7031 -9.2446 0.0483 27 1 0.8655 -9.7340 -2.9053 28 1 2.1798 -7.0754 -3.3250 29 1 1.8775 -4.9650 -2.0948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -31.363071 kcal Electronic energy + Delta-G solvation = -15504.518906 eV Core-core repulsion = 12779.464895 eV Total energy + Delta-G solvation = -2725.054011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99000 -38.94889 -36.56664 -33.58780 -31.56402 -30.85180 -30.81268 -27.93261 -25.32004 -22.68989 -22.49437 -20.78809 -19.94382 -18.33770 -16.81944 -16.22078 -15.76664 -15.30736 -15.13504 -14.51020 -14.06428 -13.70838 -13.24393 -12.69071 -12.31425 -12.16248 -11.95387 -11.85097 -11.33758 -11.25190 -10.73957 -10.67780 -10.43738 -10.35081 -10.08115 -9.17299 -8.83530 -8.49288 -7.73201 -7.42614 -6.44367 -4.67485 1.34692 1.51445 3.08942 3.14678 3.17036 3.73010 3.99331 4.11257 4.26795 4.67692 5.06496 5.08943 5.21756 5.44142 5.55367 5.72101 5.78355 5.92389 5.95362 6.21471 6.42889 6.53303 6.54798 6.72593 6.86086 6.91701 6.95191 7.31974 7.66087 7.71125 8.18545 8.74964 8.93969 10.05876 10.46370 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.060025 B = 0.005472 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.361151 B = 5115.702590 C = 5322.818289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.077 3.923 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.374 3.626 10 N -0.597 5.597 11 C 0.016 3.984 12 C 0.084 3.916 13 H 0.078 0.922 14 C -0.071 4.071 15 C -0.100 4.100 16 C -0.146 4.146 17 C 0.090 3.910 18 O -0.502 6.502 19 C -0.145 4.145 20 C -0.079 4.079 21 O -0.364 6.364 22 H 0.273 0.727 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.385 0.615 28 H 0.126 0.874 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -10.878 -1.998 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.174 3.826 10 N -0.343 5.343 11 C -0.115 4.115 12 C 0.025 3.975 13 H 0.095 0.905 14 C -0.072 4.072 15 C -0.118 4.118 16 C -0.165 4.165 17 C 0.046 3.954 18 O -0.312 6.312 19 C -0.163 4.163 20 C -0.097 4.097 21 O -0.272 6.272 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.240 0.760 28 H 0.144 0.856 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.205 -10.394 -1.806 10.551 hybrid contribution 0.273 -0.092 -0.168 0.334 sum 0.478 -10.486 -1.974 10.681 Atomic orbital electron populations 1.70000 1.07005 1.27899 1.30882 1.25746 0.94857 1.00440 0.93661 0.86225 0.79721 0.80045 0.79764 1.19029 1.20348 1.19043 1.18525 0.93998 0.86481 1.49870 0.89836 1.22028 0.88080 0.83667 0.88811 1.76254 1.09000 1.07335 1.41746 1.23867 0.94788 0.93899 0.98934 1.22586 0.91649 0.86628 0.96678 0.90472 1.19890 0.98407 0.94091 0.94772 1.20783 1.00031 0.91054 0.99932 1.21262 1.01670 0.98413 0.95112 1.18450 1.00264 0.84993 0.91693 1.84820 1.42440 1.38079 1.65814 1.21407 1.02501 0.91719 1.00700 1.20995 0.96643 0.98170 0.93884 1.86969 1.39244 1.17124 1.83888 0.91554 0.93563 0.92233 0.85571 0.85614 0.75960 0.85573 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.35 11.74 55.56 0.65 -19.69 15 2 C 0.08 2.03 5.50 -17.33 -0.10 1.94 15 3 Si 0.92 19.18 29.56 -169.99 -5.02 14.15 15 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.45 -12.54 9.50 -37.69 -0.36 -12.89 15 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 15 9 C 0.37 10.56 7.43 -16.91 -0.13 10.44 15 10 N -0.60 -16.99 9.69 -59.49 -0.58 -17.56 15 11 C 0.02 0.37 7.67 -2.47 -0.02 0.36 15 12 C 0.08 1.79 3.94 -26.94 -0.11 1.69 15 13 H 0.08 1.56 8.10 -51.94 -0.42 1.14 15 14 C -0.07 -1.29 5.03 -104.60 -0.53 -1.82 15 15 C -0.10 -1.50 9.70 -39.61 -0.38 -1.89 15 16 C -0.15 -1.99 9.99 -39.43 -0.39 -2.38 15 17 C 0.09 1.26 6.71 -39.21 -0.26 1.00 15 18 O -0.50 -5.98 13.50 -19.44 -0.26 -6.24 15 19 C -0.14 -2.18 9.99 -39.43 -0.39 -2.57 15 20 C -0.08 -1.40 9.38 -39.61 -0.37 -1.77 15 21 O -0.36 -9.28 10.00 -17.27 -0.17 -9.45 15 22 H 0.27 6.89 8.29 -40.82 -0.34 6.55 15 23 H 0.05 1.06 7.91 -51.93 -0.41 0.65 15 24 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.97 15 27 H 0.39 2.63 9.06 45.56 0.41 3.04 15 28 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 29 H 0.13 2.55 7.55 -52.48 -0.40 2.15 15 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -31.96 261.72 -6.53 -38.49 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.05 Total: 4.27 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.04 Total: -7.91 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.08 Total: -37.26 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.44 Total: -15.69 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.96 -6.53 -38.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.123 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds