Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47305 * 240.00271 * 3 2 1 5 5 H 1.48504 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47357 * 119.99774 * 3 2 1 7 7 C 1.40218 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.41263 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.30633 * 123.22355 * 0.03320 * 9 7 2 11 11 C 1.47652 * 108.35172 * 180.63468 * 10 9 7 12 12 C 1.54789 * 102.07612 * 14.93772 * 11 10 9 13 13 H 1.08988 * 111.02077 * 94.45067 * 12 11 10 14 14 C 1.50707 * 111.01698 * 218.30263 * 12 11 10 15 15 C 1.38264 * 119.94209 * 261.78262 * 14 12 11 16 16 C 1.38145 * 120.05437 * 180.02562 * 15 14 12 17 17 C 1.38734 * 119.94237 * 0.25588 * 16 15 14 18 18 O 1.35904 * 120.05067 * 179.74240 * 17 16 15 19 19 C 1.38735 * 119.88958 * 359.47324 * 17 16 15 20 20 C 1.38137 * 119.94094 * 0.54351 * 19 17 16 21 21 O 1.35191 * 123.22479 * 179.97438 * 9 7 2 22 22 H 0.96996 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.89530 * 256.75429 * 11 10 9 24 24 H 1.09004 * 110.93886 * 133.13128 * 11 10 9 25 25 H 1.07999 * 119.97244 * 359.97438 * 15 14 12 26 26 H 1.08002 * 120.02435 * 179.97438 * 16 15 14 27 27 H 0.96695 * 113.99480 * 90.00320 * 18 17 16 28 28 H 1.07992 * 120.02678 * 180.25528 * 19 17 16 29 29 H 1.08007 * 119.97477 * 179.72701 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7464 0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0010 9 6 1.3008 -2.4377 -0.0005 10 7 -0.0035 -2.5112 -0.0007 11 6 -0.3888 -3.9364 0.0149 12 6 0.9382 -4.6263 0.4137 13 1 0.9847 -4.7918 1.4900 14 6 1.1221 -5.9198 -0.3376 15 6 0.7923 -7.1202 0.2640 16 6 0.9604 -8.3072 -0.4223 17 6 1.4656 -8.2945 -1.7144 18 8 1.6367 -9.4614 -2.3897 19 6 1.7903 -7.0882 -2.3178 20 6 1.6207 -5.9040 -1.6271 21 8 1.9098 -3.6446 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 -0.7148 -4.2618 -0.9730 24 1 -1.1629 -4.1226 0.7594 25 1 0.4038 -7.1299 1.2717 26 1 0.7031 -9.2446 0.0483 27 1 0.8655 -9.7340 -2.9053 28 1 2.1798 -7.0754 -3.3250 29 1 1.8775 -4.9650 -2.0948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -56.945028 kcal Electronic energy + Delta-G solvation = -15505.628223 eV Core-core repulsion = 12779.464895 eV Total energy + Delta-G solvation = -2726.163328 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.61476 -40.35136 -37.70602 -35.57899 -33.44663 -32.47838 -32.00939 -29.68150 -27.11233 -24.16386 -23.82225 -22.47121 -21.73013 -19.38043 -18.81322 -17.76835 -17.26324 -17.13267 -16.27808 -15.97893 -15.64915 -15.20612 -14.41818 -14.32564 -14.08966 -13.77720 -13.56721 -13.26625 -12.91721 -12.89232 -12.41432 -12.34866 -12.25175 -11.90647 -11.42919 -11.07516 -10.12896 -10.01738 -9.49746 -9.34864 -8.42420 -6.80526 0.14178 0.32851 1.42268 1.43821 1.58256 2.09971 2.24593 2.54654 3.00285 3.26264 3.29152 3.76315 3.88672 3.92172 4.06264 4.18325 4.39695 4.58364 4.65071 4.80968 4.88304 4.93158 5.02223 5.24582 5.33018 5.36904 5.52852 5.78013 5.83639 6.10759 6.69179 6.84504 6.85975 8.01489 8.50509 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.060025 B = 0.005472 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.361151 B = 5115.702590 C = 5322.818289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.031 3.969 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.486 4.486 8 H 0.089 0.911 9 C 0.355 3.645 10 N -0.639 5.639 11 C 0.015 3.985 12 C 0.088 3.912 13 H 0.086 0.914 14 C -0.098 4.098 15 C -0.093 4.093 16 C -0.138 4.138 17 C 0.105 3.895 18 O -0.504 6.504 19 C -0.149 4.149 20 C -0.098 4.098 21 O -0.379 6.379 22 H 0.282 0.718 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.160 0.840 27 H 0.412 0.588 28 H 0.142 0.858 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -12.177 -1.904 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.524 4.524 8 H 0.107 0.893 9 C 0.155 3.845 10 N -0.386 5.386 11 C -0.115 4.115 12 C 0.030 3.970 13 H 0.104 0.896 14 C -0.098 4.098 15 C -0.111 4.111 16 C -0.156 4.156 17 C 0.061 3.939 18 O -0.317 6.317 19 C -0.167 4.167 20 C -0.117 4.117 21 O -0.287 6.287 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.178 0.822 27 H 0.271 0.729 28 H 0.160 0.840 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.592 -11.739 -1.725 11.880 hybrid contribution 0.100 0.108 -0.247 0.287 sum 0.693 -11.632 -1.972 11.818 Atomic orbital electron populations 1.70110 1.08991 1.29565 1.31187 1.26865 0.95766 1.04160 0.92170 0.84964 0.78266 0.74353 0.80211 1.18164 1.19058 1.18024 1.19039 0.94635 0.87571 1.51154 0.89332 1.22347 0.88542 0.84685 0.88938 1.76152 1.09503 1.10676 1.42231 1.23830 0.96229 0.92228 0.99251 1.22682 0.89435 0.87205 0.97714 0.89593 1.19728 1.01468 0.93575 0.95078 1.21004 0.99004 0.90219 1.00868 1.21596 1.00262 0.99065 0.94725 1.18500 0.98377 0.85129 0.91940 1.84761 1.44234 1.36669 1.66053 1.21525 1.02508 0.91310 1.01343 1.20843 0.98308 0.98192 0.94321 1.86929 1.40499 1.17238 1.84048 0.90791 0.93811 0.90935 0.83338 0.82205 0.72902 0.84003 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.89 11.74 21.87 0.26 -43.63 15 2 C 0.03 1.65 5.50 85.36 0.47 2.12 15 3 Si 1.00 39.32 29.56 68.60 2.03 41.35 15 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 6 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 7 C -0.49 -27.92 9.50 23.50 0.22 -27.70 15 8 H 0.09 4.78 7.85 -2.91 -0.02 4.76 15 9 C 0.35 20.89 7.43 85.61 0.64 21.53 15 10 N -0.64 -37.76 9.69 -456.06 -4.42 -42.18 15 11 C 0.02 0.74 7.67 86.77 0.67 1.40 15 12 C 0.09 3.86 3.94 30.46 0.12 3.98 15 13 H 0.09 3.52 8.10 -2.39 -0.02 3.50 15 14 C -0.10 -3.55 5.03 -19.85 -0.10 -3.65 15 15 C -0.09 -2.59 9.70 22.25 0.22 -2.37 15 16 C -0.14 -3.25 9.99 22.37 0.22 -3.03 15 17 C 0.11 2.62 6.71 22.51 0.15 2.77 15 18 O -0.50 -9.96 13.50 -92.47 -1.25 -11.21 15 19 C -0.15 -4.29 9.99 22.36 0.22 -4.06 15 20 C -0.10 -3.55 9.38 22.25 0.21 -3.34 15 21 O -0.38 -20.16 10.00 -84.71 -0.85 -21.01 15 22 H 0.28 14.38 8.29 -92.71 -0.77 13.61 15 23 H 0.04 2.09 7.91 -2.39 -0.02 2.07 15 24 H 0.07 3.21 8.14 -2.39 -0.02 3.19 15 25 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 26 H 0.16 2.71 8.06 -2.91 -0.02 2.68 15 27 H 0.41 3.82 9.06 -74.06 -0.67 3.15 15 28 H 0.14 3.52 8.06 -2.91 -0.02 3.50 15 29 H 0.10 4.25 7.55 -2.91 -0.02 4.23 15 Total: -1.00 -71.26 261.72 -0.69 -71.94 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.51 Total: 17.11 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.04 Total: -12.36 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -4.16 Total: -85.82 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -2.10 Total: -32.22 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -71.26 -0.69 -71.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.999 kcal (2) G-P(sol) polarization free energy of solvation -71.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds