Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00324 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00074 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99785 * 3 2 1 7 7 C 1.40225 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 180.02562 * 7 2 1 9 9 C 1.41260 * 119.99923 * 359.72663 * 7 2 1 10 10 N 1.30638 * 123.22249 * 359.70520 * 9 7 2 11 11 C 1.47590 * 108.33095 * 179.22128 * 10 9 7 12 12 C 1.54781 * 102.16559 * 345.38713 * 11 10 9 13 13 H 1.09002 * 111.02041 * 265.39338 * 12 11 10 14 14 C 1.50699 * 111.01790 * 141.51251 * 12 11 10 15 15 C 1.38277 * 119.94092 * 286.14665 * 14 12 11 16 16 C 1.38144 * 120.04944 * 179.72538 * 15 14 12 17 17 C 1.38726 * 119.94911 * 0.53222 * 16 15 14 18 18 O 1.35899 * 120.05698 * 179.72527 * 17 16 15 19 19 C 1.38728 * 119.88763 * 359.74227 * 17 16 15 20 20 C 1.38150 * 119.94703 * 0.02562 * 19 17 16 21 21 O 1.35192 * 123.22693 * 179.97438 * 9 7 2 22 22 H 0.97000 * 120.00265 * 0.02562 * 1 2 3 23 23 H 1.09007 * 111.06381 * 227.08078 * 11 10 9 24 24 H 1.09004 * 110.72208 * 103.54073 * 11 10 9 25 25 H 1.07998 * 119.97229 * 359.97438 * 15 14 12 26 26 H 1.08001 * 120.02049 * 180.29804 * 16 15 14 27 27 H 0.96701 * 114.00290 * 270.01572 * 18 17 16 28 28 H 1.08008 * 120.02808 * 179.97438 * 19 17 16 29 29 H 1.07998 * 119.97211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4875 2.0464 -1.4000 5 1 1.4374 2.6526 0.7001 6 1 3.5376 1.4401 0.7001 7 6 2.0071 -1.2144 -0.0005 8 1 3.0871 -1.2144 -0.0001 9 6 1.3008 -2.4377 0.0047 10 7 -0.0035 -2.5111 0.0159 11 6 -0.3883 -3.9359 -0.0007 12 6 0.9364 -4.6269 -0.4047 13 1 0.9780 -4.7937 -1.4811 14 6 1.1232 -5.9192 0.3477 15 6 1.4700 -5.8946 1.6860 16 6 1.6363 -7.0779 2.3794 17 6 1.4659 -8.2914 1.7291 18 8 1.6345 -9.4568 2.4077 19 6 1.1237 -8.3133 0.3849 20 6 0.9538 -7.1274 -0.3029 21 8 1.9098 -3.6447 0.0041 22 1 -0.4850 0.8400 -0.0004 23 1 -1.1662 -4.1229 -0.7412 24 1 -0.7101 -4.2600 0.9890 25 1 1.6069 -4.9497 2.1907 26 1 1.9023 -7.0581 3.4259 27 1 2.5393 -9.7972 2.3861 28 1 0.9909 -9.2569 -0.1237 29 1 0.6869 -7.1440 -1.3493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930263.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -57.081451 kcal Electronic energy + Delta-G solvation = -15504.946987 eV Core-core repulsion = 12778.777743 eV Total energy + Delta-G solvation = -2726.169244 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.61987 -40.35441 -37.70951 -35.57892 -33.44427 -32.48041 -32.02401 -29.68308 -27.11170 -24.21576 -23.77877 -22.48655 -21.73809 -19.38258 -18.81944 -17.74704 -17.27524 -17.14467 -16.31413 -15.94121 -15.64228 -15.19142 -14.42209 -14.32226 -14.07171 -13.81999 -13.55625 -13.24397 -12.99153 -12.91152 -12.40856 -12.39328 -12.18548 -11.88003 -11.43422 -11.08458 -10.11282 -10.01993 -9.49870 -9.37701 -8.42574 -6.80633 0.13292 0.32508 1.40491 1.43891 1.60323 2.09669 2.24636 2.52198 3.05865 3.24024 3.29714 3.76737 3.86469 3.91894 4.05804 4.17526 4.39119 4.57835 4.64461 4.80604 4.87437 4.92647 5.01661 5.24286 5.32809 5.36411 5.53595 5.77129 5.82907 6.11052 6.69230 6.84454 6.85948 8.01465 8.50567 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.059806 B = 0.005458 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.065824 B = 5128.802851 C = 5307.116610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.030 3.970 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.355 3.645 10 N -0.639 5.639 11 C 0.013 3.987 12 C 0.089 3.911 13 H 0.087 0.913 14 C -0.098 4.098 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.106 3.894 18 O -0.504 6.504 19 C -0.139 4.139 20 C -0.092 4.092 21 O -0.378 6.378 22 H 0.281 0.719 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.142 0.858 27 H 0.412 0.588 28 H 0.161 0.839 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -12.365 0.797 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.107 0.893 9 C 0.155 3.845 10 N -0.386 5.386 11 C -0.117 4.117 12 C 0.031 3.969 13 H 0.105 0.895 14 C -0.099 4.099 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.062 3.938 18 O -0.317 6.317 19 C -0.157 4.157 20 C -0.110 4.110 21 O -0.286 6.286 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.160 0.840 27 H 0.271 0.729 28 H 0.178 0.822 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.991 -11.883 0.994 12.294 hybrid contribution 0.928 0.081 -0.032 0.932 sum 3.919 -11.802 0.962 12.473 Atomic orbital electron populations 1.70124 1.09032 1.29497 1.31257 1.26885 0.95760 1.04218 0.92167 0.84900 0.78610 0.74581 0.79627 1.18345 1.19138 1.17788 1.19067 0.94642 0.87509 1.51050 0.89261 1.22364 0.88519 0.84735 0.88926 1.76145 1.09599 1.10588 1.42224 1.23836 0.96402 0.92350 0.99158 1.22682 0.89285 0.87174 0.97808 0.89495 1.19720 1.02070 0.93540 0.94561 1.20822 0.98484 0.98117 0.94074 1.21517 1.02562 0.91387 1.01258 1.18489 0.99623 0.85314 0.90397 1.84760 1.36453 1.36282 1.74219 1.21606 1.01515 0.99199 0.93374 1.21047 0.98727 0.90210 1.01006 1.86929 1.40294 1.17134 1.84258 0.90816 0.91106 0.93966 0.88063 0.83999 0.72865 0.82178 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.05 11.74 21.87 0.26 -43.79 15 2 C 0.03 1.61 5.50 85.36 0.47 2.08 15 3 Si 1.00 39.29 29.56 68.60 2.03 41.31 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 15 7 C -0.48 -27.79 9.50 23.50 0.22 -27.57 15 8 H 0.09 4.80 7.85 -2.91 -0.02 4.78 15 9 C 0.35 20.88 7.43 85.61 0.64 21.52 15 10 N -0.64 -37.99 9.69 -456.19 -4.42 -42.41 15 11 C 0.01 0.65 7.64 86.78 0.66 1.31 15 12 C 0.09 3.90 3.93 30.46 0.12 4.02 15 13 H 0.09 3.54 8.05 -2.39 -0.02 3.52 15 14 C -0.10 -3.57 5.04 -19.85 -0.10 -3.67 15 15 C -0.10 -3.49 9.20 22.26 0.20 -3.28 15 16 C -0.15 -4.29 9.99 22.36 0.22 -4.07 15 17 C 0.11 2.64 6.70 22.50 0.15 2.79 15 18 O -0.50 -9.92 13.50 -92.41 -1.25 -11.17 15 19 C -0.14 -3.25 9.99 22.37 0.22 -3.03 15 20 C -0.09 -2.56 9.68 22.25 0.22 -2.34 15 21 O -0.38 -20.03 10.26 -84.72 -0.87 -20.90 15 22 H 0.28 14.38 8.29 -92.71 -0.77 13.61 15 23 H 0.07 3.21 8.14 -2.38 -0.02 3.19 15 24 H 0.04 2.06 7.77 -2.38 -0.02 2.04 15 25 H 0.10 4.17 7.78 -2.91 -0.02 4.15 15 26 H 0.14 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.41 3.77 9.06 -74.06 -0.67 3.09 15 28 H 0.16 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.15 3.40 8.05 -2.91 -0.02 3.37 15 Total: -1.00 -71.50 261.79 -0.72 -72.21 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.51 Total: 16.99 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 3.03 Total: -12.25 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -4.16 Total: -86.20 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -2.12 Total: -32.07 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -71.50 -0.72 -72.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930263.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.130 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds