Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48499 * 109.47061 * 240.00072 * 3 2 1 5 5 H 1.48494 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00129 * 3 2 1 7 7 C 1.37883 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.32802 * 119.14331 * 269.98254 * 10 9 7 12 12 N 1.28921 * 122.14557 * 180.02562 * 11 10 9 13 13 C 1.33681 * 119.67037 * 359.97438 * 12 11 10 14 14 C 1.40436 * 121.85380 * 180.32046 * 13 12 11 15 15 C 1.36130 * 119.64591 * 180.24751 * 14 13 12 16 16 C 1.39368 * 121.07512 * 359.45028 * 15 14 13 17 17 C 1.36373 * 120.98613 * 0.26208 * 16 15 14 18 18 F 1.35099 * 120.23767 * 180.02562 * 17 16 15 19 19 C 1.40575 * 119.52502 * 0.02562 * 17 16 15 20 20 N 1.31367 * 119.14595 * 90.00369 * 10 9 7 21 21 H 0.97004 * 119.99337 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46986 * 60.00864 * 9 7 2 23 23 H 1.08996 * 109.47764 * 300.00970 * 9 7 2 24 24 H 1.08002 * 120.17832 * 359.97438 * 14 13 12 25 25 H 1.08002 * 119.46615 * 179.73815 * 15 14 13 26 26 H 1.07995 * 119.50562 * 180.27902 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 7 2.6501 -4.1365 -1.1604 12 7 3.4863 -5.1154 -1.2280 13 6 3.9555 -5.6637 -0.1027 14 6 4.8726 -6.7271 -0.1227 15 6 5.3172 -7.2550 1.0506 16 6 4.8859 -6.7500 2.2759 17 6 4.0006 -5.7144 2.3360 18 9 3.5930 -5.2364 3.5321 19 6 3.5152 -5.1479 1.1445 20 7 2.6458 -4.1310 1.1468 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8895 24 1 5.2199 -7.1268 -1.0640 25 1 6.0193 -8.0755 1.0318 26 1 5.2585 -7.1851 3.1914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = 43.960452 kcal Electronic energy + Delta-G solvation = -15179.803102 eV Core-core repulsion = 12366.847810 eV Total energy + Delta-G solvation = -2812.955292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.90700 -41.57891 -37.91212 -35.07026 -33.43416 -31.88752 -30.64870 -28.37031 -26.05042 -24.69914 -22.53716 -22.23655 -19.17346 -18.60764 -17.16394 -16.62906 -16.09632 -15.91898 -15.25367 -14.81928 -14.76741 -13.98721 -13.26147 -12.59523 -12.56040 -12.22596 -11.98890 -11.89451 -11.59529 -11.46242 -11.21920 -10.76951 -10.73343 -10.02069 -9.78124 -9.20317 -8.98572 -8.52124 -8.39391 -6.16057 -4.20526 -0.09619 0.54496 1.68987 2.74033 3.29721 3.32891 3.36458 3.68347 3.95069 4.01913 4.04848 4.38244 4.38490 4.54913 4.77159 4.94667 5.20846 5.36553 5.53509 5.73831 5.78031 5.97013 6.29309 6.51233 7.13628 7.28860 7.46585 7.75427 8.04877 8.77604 8.78023 9.42332 10.94599 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.006752 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.535331 B = 4145.723534 C = 4462.906716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.081 3.919 10 C 0.303 3.697 11 N -0.240 5.240 12 N -0.151 5.151 13 C 0.004 3.996 14 C -0.066 4.066 15 C -0.094 4.094 16 C -0.121 4.121 17 C 0.126 3.874 18 F -0.116 7.116 19 C 0.105 3.895 20 N -0.440 5.440 21 H 0.267 0.733 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -14.117 3.006 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.041 3.959 10 C 0.037 3.963 11 N -0.099 5.099 12 N -0.015 5.015 13 C -0.129 4.129 14 C -0.088 4.088 15 C -0.115 4.115 16 C -0.144 4.144 17 C 0.105 3.895 18 F -0.094 7.094 19 C -0.036 4.036 20 N -0.162 5.162 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.166 0.834 25 H 0.163 0.837 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.960 -13.507 2.301 16.371 hybrid contribution 0.727 0.666 1.026 1.423 sum 9.686 -12.840 3.326 16.424 Atomic orbital electron populations 1.69924 1.05981 1.27449 1.49249 1.24916 0.94986 0.99263 0.94570 0.86455 0.79489 0.82136 0.78829 1.19964 1.20905 1.20078 1.20687 0.92758 0.89005 1.52882 0.92741 1.18385 0.90888 0.86060 1.00551 1.26036 0.93152 0.94000 0.83138 1.73901 1.05603 1.03819 1.26599 1.74486 1.01894 1.01612 1.23531 1.20651 1.00625 0.99713 0.91887 1.20756 0.94654 0.93517 0.99886 1.20738 0.99938 1.00150 0.90671 1.21042 0.97167 0.95764 1.00474 1.17040 0.97588 0.95442 0.79478 1.91562 1.88810 1.87176 1.41847 1.19791 0.95738 0.94576 0.93446 1.69414 1.08860 1.07174 1.30725 0.92359 0.92390 0.92599 0.83381 0.83665 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.51 -14.62 9.09 -34.44 -0.31 -14.93 15 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.08 2.13 5.41 -29.04 -0.16 1.97 15 10 C 0.30 7.23 6.88 -156.69 -1.08 6.15 15 11 N -0.24 -5.45 11.47 32.44 0.37 -5.08 15 12 N -0.15 -2.97 11.68 32.23 0.38 -2.60 15 13 C 0.00 0.06 6.67 -84.81 -0.57 -0.50 15 14 C -0.07 -0.77 10.01 -39.51 -0.40 -1.16 15 15 C -0.09 -0.84 9.94 -39.92 -0.40 -1.24 15 16 C -0.12 -1.27 9.93 -39.83 -0.40 -1.66 15 17 C 0.13 1.93 7.31 -39.37 -0.29 1.64 15 18 F -0.12 -1.92 17.16 2.25 0.04 -1.88 15 19 C 0.10 1.97 6.61 -84.71 -0.56 1.41 15 20 N -0.44 -9.97 10.33 -8.56 -0.09 -10.06 15 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.06 1.56 8.14 -51.93 -0.42 1.14 15 23 H 0.06 1.53 8.14 -51.93 -0.42 1.10 15 24 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 25 H 0.15 0.70 8.06 -52.49 -0.42 0.28 15 26 H 0.15 1.04 8.06 -52.49 -0.42 0.62 15 LS Contribution 248.61 15.07 3.75 3.75 Total: -1.00 -31.45 248.61 -5.74 -37.19 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: -1.65 Total: -6.27 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.25 Total: -6.58 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 1.40 Total: -42.81 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.45 -5.74 -37.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.151 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds