Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48499 * 109.47061 * 240.00072 * 3 2 1 5 5 H 1.48494 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46830 * 120.00129 * 3 2 1 7 7 C 1.37883 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.32802 * 119.14331 * 269.98254 * 10 9 7 12 12 N 1.28921 * 122.14557 * 180.02562 * 11 10 9 13 13 C 1.33681 * 119.67037 * 359.97438 * 12 11 10 14 14 C 1.40436 * 121.85380 * 180.32046 * 13 12 11 15 15 C 1.36130 * 119.64591 * 180.24751 * 14 13 12 16 16 C 1.39368 * 121.07512 * 359.45028 * 15 14 13 17 17 C 1.36373 * 120.98613 * 0.26208 * 16 15 14 18 18 F 1.35099 * 120.23767 * 180.02562 * 17 16 15 19 19 C 1.40575 * 119.52502 * 0.02562 * 17 16 15 20 20 N 1.31367 * 119.14595 * 90.00369 * 10 9 7 21 21 H 0.97004 * 119.99337 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46986 * 60.00864 * 9 7 2 23 23 H 1.08996 * 109.47764 * 300.00970 * 9 7 2 24 24 H 1.08002 * 120.17832 * 359.97438 * 14 13 12 25 25 H 1.08002 * 119.46615 * 179.73815 * 15 14 13 26 26 H 1.07995 * 119.50562 * 180.27902 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 7 2.6501 -4.1365 -1.1604 12 7 3.4863 -5.1154 -1.2280 13 6 3.9555 -5.6637 -0.1027 14 6 4.8726 -6.7271 -0.1227 15 6 5.3172 -7.2550 1.0506 16 6 4.8859 -6.7500 2.2759 17 6 4.0006 -5.7144 2.3360 18 9 3.5930 -5.2364 3.5321 19 6 3.5152 -5.1479 1.1445 20 7 2.6458 -4.1310 1.1468 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8895 24 1 5.2199 -7.1268 -1.0640 25 1 6.0193 -8.0755 1.0318 26 1 5.2585 -7.1851 3.1914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = 21.744105 kcal Electronic energy + Delta-G solvation = -15180.766475 eV Core-core repulsion = 12366.847810 eV Total energy + Delta-G solvation = -2813.918665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.06605 -43.00923 -39.09058 -36.63549 -35.37681 -33.45044 -31.91781 -30.09076 -27.44615 -26.42345 -24.21175 -23.46888 -20.51820 -19.93947 -18.78055 -18.37883 -17.28464 -17.26172 -16.75228 -16.25845 -16.15096 -15.40537 -14.64000 -14.46994 -13.82976 -13.69405 -13.46299 -13.22438 -13.15431 -13.14863 -12.78758 -12.67085 -12.44867 -11.95694 -11.67655 -10.71691 -10.61994 -10.50849 -9.57427 -8.31956 -6.45632 -1.36295 -0.77432 0.42485 1.35971 1.40132 1.47982 1.60165 2.32685 2.39367 2.54228 2.62773 2.77810 3.01618 3.25255 3.43258 3.61521 3.97831 4.18116 4.47722 4.64778 4.80869 4.92933 5.05073 5.09764 5.15706 5.54526 5.55041 5.83224 5.91954 6.57691 7.21092 7.23735 8.79395 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.006752 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.535331 B = 4145.723534 C = 4462.906716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.093 3.907 10 C 0.279 3.721 11 N -0.278 5.278 12 N -0.160 5.160 13 C -0.001 4.001 14 C -0.067 4.067 15 C -0.056 4.056 16 C -0.067 4.067 17 C 0.080 3.920 18 F -0.132 7.132 19 C 0.082 3.918 20 N -0.475 5.475 21 H 0.272 0.728 22 H 0.037 0.963 23 H 0.030 0.970 24 H 0.183 0.817 25 H 0.213 0.787 26 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.132 -16.793 3.838 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.053 3.947 10 C 0.011 3.989 11 N -0.136 5.136 12 N -0.022 5.022 13 C -0.135 4.135 14 C -0.088 4.088 15 C -0.076 4.076 16 C -0.090 4.090 17 C 0.058 3.942 18 F -0.111 7.111 19 C -0.058 4.058 20 N -0.197 5.197 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.200 0.800 25 H 0.230 0.770 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.522 -16.184 3.099 20.696 hybrid contribution -0.147 1.119 0.895 1.440 sum 12.375 -15.066 3.995 19.902 Atomic orbital electron populations 1.70033 1.07452 1.28680 1.49584 1.25846 0.95937 1.02917 0.93728 0.85388 0.78361 0.77597 0.79035 1.19225 1.19443 1.19553 1.20910 0.92418 0.90572 1.53529 0.93815 1.17934 0.91189 0.87373 0.98194 1.25220 0.94560 0.94747 0.84334 1.73753 1.07852 1.05879 1.26102 1.74305 1.01670 1.01125 1.25072 1.21317 1.01182 1.00722 0.90294 1.21319 0.92959 0.91533 1.03017 1.21557 0.98124 0.99593 0.88340 1.21816 0.92245 0.91545 1.03417 1.17450 1.00616 0.98117 0.77977 1.91519 1.89464 1.87842 1.42259 1.20430 0.95426 0.94011 0.95942 1.69205 1.10765 1.09304 1.30429 0.91879 0.94492 0.95150 0.79974 0.77031 0.78406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.73 13.29 21.45 0.28 -55.44 15 2 C 0.02 0.92 5.46 84.66 0.46 1.38 15 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.54 -32.41 9.09 25.60 0.23 -32.18 15 8 H 0.04 2.66 7.74 -2.91 -0.02 2.64 15 9 C 0.09 5.36 5.41 29.10 0.16 5.52 15 10 C 0.28 14.44 6.88 138.57 0.95 15.39 15 11 N -0.28 -13.51 11.47 -51.29 -0.59 -14.10 15 12 N -0.16 -6.44 11.68 -51.94 -0.61 -7.05 15 13 C 0.00 -0.03 6.67 40.32 0.27 0.24 15 14 C -0.07 -1.20 10.01 22.31 0.22 -0.98 15 15 C -0.06 -0.55 9.94 22.05 0.22 -0.33 15 16 C -0.07 -0.98 9.93 22.11 0.22 -0.76 15 17 C 0.08 2.27 7.31 22.40 0.16 2.44 15 18 F -0.13 -4.32 17.16 44.97 0.77 -3.55 15 19 C 0.08 3.11 6.61 40.34 0.27 3.38 15 20 N -0.48 -22.97 10.33 -180.99 -1.87 -24.84 15 21 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 22 H 0.04 2.21 8.14 -2.38 -0.02 2.19 15 23 H 0.03 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.18 2.13 8.06 -2.91 -0.02 2.11 15 25 H 0.21 -0.36 8.06 -2.91 -0.02 -0.39 15 26 H 0.20 1.07 8.06 -2.91 -0.02 1.05 15 Total: -1.00 -78.08 248.61 4.40 -73.68 By element: Atomic # 1 Polarization: -11.48 SS G_CDS: 1.22 Total: -10.26 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.17 Total: -5.90 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.78 Total: -101.43 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.77 Total: -3.55 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.08 4.40 -73.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.422 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds