Wall clock time and date at job start Mon Mar 30 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48493 * 109.47263 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.47373 * 30.00132 * 3 2 1 6 6 H 1.48508 * 109.46985 * 150.00249 * 3 2 1 7 7 C 1.40280 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.40009 * 120.00020 * 359.97438 * 7 2 1 10 10 N 1.33081 * 126.67572 * 0.04755 * 9 7 2 11 11 N 1.28558 * 109.38607 * 179.97438 * 10 9 7 12 12 C 1.31314 * 110.27751 * 0.02562 * 11 10 9 13 13 N 1.35440 * 107.84243 * 359.97438 * 12 11 10 14 14 C 1.40084 * 127.07930 * 180.02562 * 13 12 11 15 15 C 1.38844 * 120.07712 * 64.97577 * 14 13 12 16 16 C 1.38113 * 119.95137 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.11851 * 0.02562 * 16 15 14 18 18 C 1.38255 * 120.16089 * 359.97438 * 17 16 15 19 19 C 1.38321 * 120.04878 * 359.75631 * 18 17 16 20 20 F 1.35099 * 120.06343 * 180.27205 * 19 18 17 21 21 H 0.97002 * 119.99832 * 0.02562 * 1 2 3 22 22 H 1.07997 * 126.07892 * 180.02562 * 12 11 10 23 23 H 1.08000 * 120.02348 * 359.97438 * 15 14 13 24 24 H 1.08006 * 119.94311 * 179.97438 * 16 15 14 25 25 H 1.07999 * 119.91771 * 179.97438 * 17 16 15 26 26 H 1.08001 * 119.97680 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0080 -1.2149 -0.0005 8 1 3.0880 -1.2149 -0.0001 9 6 1.3080 -2.4274 -0.0005 10 7 -0.0138 -2.5821 -0.0010 11 7 -0.2967 -3.8361 -0.0013 12 6 0.8047 -4.5511 -0.0007 13 7 1.8548 -3.6957 -0.0004 14 6 3.2155 -4.0287 -0.0001 15 6 3.7707 -4.6876 -1.0888 16 6 5.1127 -5.0142 -1.0861 17 6 5.9045 -4.6865 -0.0005 18 6 5.3566 -4.0304 1.0861 19 6 4.0146 -3.6951 1.0882 20 9 3.4801 -3.0490 2.1475 21 1 -0.4850 0.8401 -0.0004 22 1 0.8630 -5.6295 -0.0012 23 1 3.1537 -4.9446 -1.9372 24 1 5.5444 -5.5272 -1.9329 25 1 6.9534 -4.9438 -0.0016 26 1 5.9777 -3.7756 1.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972381.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:18 Heat of formation + Delta-G solvation = 57.243182 kcal Electronic energy + Delta-G solvation = -15791.699846 eV Core-core repulsion = 12979.320537 eV Total energy + Delta-G solvation = -2812.379309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.40492 -40.96050 -38.55852 -33.68881 -33.61270 -30.50025 -29.31748 -28.85514 -25.63083 -23.10837 -22.50918 -20.53552 -20.26710 -17.98039 -17.03899 -16.34008 -16.14638 -15.20890 -14.95843 -14.64583 -13.97008 -13.81986 -13.45530 -13.15646 -12.80606 -12.12271 -11.89874 -11.43795 -11.30155 -11.23431 -10.95745 -10.41563 -9.67249 -9.49149 -9.38586 -8.72706 -8.50365 -8.07461 -7.71887 -6.64262 -4.60370 1.25171 1.32925 2.94587 3.07478 3.11608 3.42544 3.72736 3.77425 3.99452 4.50583 4.51864 4.89749 5.02298 5.29461 5.36123 5.48302 5.64164 6.01373 6.16751 6.20900 6.41432 6.45444 6.81547 6.92434 7.08979 7.24067 7.49752 8.14577 8.21643 8.71882 8.90880 10.28461 10.72940 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.010982 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.304244 B = 2548.955635 C = 3233.631449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.078 3.922 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.080 0.920 9 C 0.344 3.656 10 N -0.344 5.344 11 N -0.294 5.294 12 C 0.039 3.961 13 N -0.490 5.490 14 C 0.135 3.865 15 C -0.095 4.095 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.149 4.149 19 C 0.106 3.894 20 F -0.123 7.123 21 H 0.280 0.720 22 H 0.182 0.818 23 H 0.134 0.866 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 -5.638 -0.745 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.098 0.902 9 C 0.104 3.896 10 N -0.190 5.190 11 N -0.132 5.132 12 C -0.244 4.244 13 N -0.189 5.189 14 C 0.040 3.960 15 C -0.115 4.115 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.169 4.169 19 C 0.084 3.916 20 F -0.101 7.101 21 H 0.091 0.909 22 H 0.199 0.801 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.651 -5.167 -0.694 11.859 hybrid contribution 1.753 0.431 0.200 1.816 sum 12.404 -4.736 -0.494 13.287 Atomic orbital electron populations 1.69945 1.07097 1.28758 1.29796 1.25803 0.94906 1.00695 0.93333 0.86153 0.80202 0.80223 0.79258 1.19267 1.19824 1.18550 1.18173 0.93742 0.87272 1.48513 0.90169 1.21877 0.89559 0.83388 0.94791 1.75650 1.08052 1.04550 1.30773 1.73986 1.23990 1.00927 1.14320 1.25278 0.83758 0.96927 1.18459 1.43666 1.02595 1.08191 1.64432 1.17601 0.84190 1.00548 0.93651 1.21183 0.95388 0.98487 0.96441 1.21012 0.93076 1.01188 0.98925 1.20947 0.99947 0.98257 0.92966 1.21044 0.92847 1.02137 1.00855 1.17947 0.92153 0.96902 0.84572 1.91558 1.86557 1.78499 1.53520 0.90880 0.80136 0.84845 0.85179 0.85120 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.60 11.95 55.57 0.66 -19.93 15 2 C 0.08 2.07 5.50 -17.28 -0.10 1.98 15 3 Si 0.92 19.18 29.56 -169.99 -5.03 14.16 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.27 -5.55 7.11 56.52 0.40 -5.14 15 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.44 -12.09 9.04 -38.15 -0.34 -12.44 15 8 H 0.08 2.10 7.55 -52.49 -0.40 1.70 15 9 C 0.34 9.88 7.30 -154.96 -1.13 8.75 15 10 N -0.34 -10.64 10.53 31.26 0.33 -10.31 15 11 N -0.29 -8.31 12.21 29.81 0.36 -7.95 15 12 C 0.04 0.95 12.63 -89.33 -1.13 -0.18 15 13 N -0.49 -12.04 2.69 -61.27 -0.16 -12.21 15 14 C 0.14 2.72 5.47 -83.55 -0.46 2.26 15 15 C -0.10 -1.52 9.92 -39.40 -0.39 -1.91 15 16 C -0.12 -1.51 10.04 -39.60 -0.40 -1.91 15 17 C -0.10 -1.20 10.04 -39.55 -0.40 -1.60 15 18 C -0.15 -2.12 10.02 -39.54 -0.40 -2.51 15 19 C 0.11 2.00 7.04 -39.24 -0.28 1.73 15 20 F -0.12 -2.69 16.91 2.25 0.04 -2.65 15 21 H 0.28 7.07 8.29 -40.82 -0.34 6.73 15 22 H 0.18 3.50 8.06 -52.49 -0.42 3.08 15 23 H 0.13 2.03 8.06 -52.49 -0.42 1.60 15 24 H 0.13 1.17 8.06 -52.48 -0.42 0.74 15 25 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 26 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -33.74 248.31 -6.71 -40.45 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -1.64 Total: 0.53 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -5.01 Total: -5.82 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 1.19 Total: -50.40 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.74 -6.71 -40.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972381.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.696 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds