Wall clock time and date at job start Mon Mar 30 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48493 * 109.47263 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.47373 * 30.00132 * 3 2 1 6 6 H 1.48508 * 109.46985 * 150.00249 * 3 2 1 7 7 C 1.40280 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.40009 * 120.00020 * 359.97438 * 7 2 1 10 10 N 1.33081 * 126.67572 * 0.04755 * 9 7 2 11 11 N 1.28558 * 109.38607 * 179.97438 * 10 9 7 12 12 C 1.31314 * 110.27751 * 0.02562 * 11 10 9 13 13 N 1.35440 * 107.84243 * 359.97438 * 12 11 10 14 14 C 1.40084 * 127.07930 * 180.02562 * 13 12 11 15 15 C 1.38844 * 120.07712 * 64.97577 * 14 13 12 16 16 C 1.38113 * 119.95137 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.11851 * 0.02562 * 16 15 14 18 18 C 1.38255 * 120.16089 * 359.97438 * 17 16 15 19 19 C 1.38321 * 120.04878 * 359.75631 * 18 17 16 20 20 F 1.35099 * 120.06343 * 180.27205 * 19 18 17 21 21 H 0.97002 * 119.99832 * 0.02562 * 1 2 3 22 22 H 1.07997 * 126.07892 * 180.02562 * 12 11 10 23 23 H 1.08000 * 120.02348 * 359.97438 * 15 14 13 24 24 H 1.08006 * 119.94311 * 179.97438 * 16 15 14 25 25 H 1.07999 * 119.91771 * 179.97438 * 17 16 15 26 26 H 1.08001 * 119.97680 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0080 -1.2149 -0.0005 8 1 3.0880 -1.2149 -0.0001 9 6 1.3080 -2.4274 -0.0005 10 7 -0.0138 -2.5821 -0.0010 11 7 -0.2967 -3.8361 -0.0013 12 6 0.8047 -4.5511 -0.0007 13 7 1.8548 -3.6957 -0.0004 14 6 3.2155 -4.0287 -0.0001 15 6 3.7707 -4.6876 -1.0888 16 6 5.1127 -5.0142 -1.0861 17 6 5.9045 -4.6865 -0.0005 18 6 5.3566 -4.0304 1.0861 19 6 4.0146 -3.6951 1.0882 20 9 3.4801 -3.0490 2.1475 21 1 -0.4850 0.8401 -0.0004 22 1 0.8630 -5.6295 -0.0012 23 1 3.1537 -4.9446 -1.9372 24 1 5.5444 -5.5272 -1.9329 25 1 6.9534 -4.9438 -0.0016 26 1 5.9777 -3.7756 1.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972381.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:18 Heat of formation + Delta-G solvation = 36.713422 kcal Electronic energy + Delta-G solvation = -15792.590083 eV Core-core repulsion = 12979.320537 eV Total energy + Delta-G solvation = -2813.269547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.90564 -42.90109 -39.81730 -35.66053 -35.28253 -31.72927 -31.25993 -30.34029 -27.66977 -24.54512 -23.80873 -22.49815 -21.96794 -19.67316 -18.58705 -18.00666 -17.53430 -16.85212 -16.57329 -15.92280 -15.73589 -15.45190 -14.98498 -14.89988 -14.18024 -13.49165 -13.19735 -13.08471 -12.97691 -12.89497 -12.39303 -12.04782 -11.69762 -11.38915 -11.05765 -10.51955 -9.92842 -9.80856 -9.57183 -8.58674 -6.68866 0.01118 0.17310 1.22955 1.35569 1.52937 1.65690 2.06305 2.27149 2.48132 2.56887 3.23619 3.30485 3.78447 4.04087 4.06397 4.31890 4.32808 4.58189 4.87946 5.01373 5.08226 5.11853 5.24915 5.30245 5.37532 5.55610 5.85346 6.16098 6.25048 6.71638 6.99767 8.37712 8.67508 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.010982 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.304244 B = 2548.955635 C = 3233.631449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.463 4.463 8 H 0.085 0.915 9 C 0.317 3.683 10 N -0.398 5.398 11 N -0.345 5.345 12 C 0.068 3.932 13 N -0.487 5.487 14 C 0.082 3.918 15 C -0.099 4.099 16 C -0.103 4.103 17 C -0.076 4.076 18 C -0.141 4.141 19 C 0.068 3.932 20 F -0.154 7.154 21 H 0.287 0.713 22 H 0.228 0.772 23 H 0.135 0.865 24 H 0.177 0.823 25 H 0.184 0.816 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.638 -6.538 -1.527 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.075 3.925 10 N -0.243 5.243 11 N -0.183 5.183 12 C -0.218 4.218 13 N -0.184 5.184 14 C -0.011 4.011 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.094 4.094 18 C -0.160 4.160 19 C 0.047 3.953 20 F -0.133 7.133 21 H 0.097 0.903 22 H 0.244 0.756 23 H 0.152 0.848 24 H 0.194 0.806 25 H 0.202 0.798 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 14.780 -6.109 -1.480 16.061 hybrid contribution 0.658 0.439 0.414 0.893 sum 15.438 -5.670 -1.066 16.481 Atomic orbital electron populations 1.70076 1.09238 1.30228 1.31316 1.26984 0.95734 1.04618 0.91893 0.84943 0.78654 0.74544 0.79923 1.17864 1.18856 1.17692 1.18498 0.94034 0.87910 1.49862 0.89674 1.22182 0.89588 0.85339 0.95440 1.75507 1.10013 1.05971 1.32787 1.73880 1.26045 1.00744 1.17608 1.26144 0.83195 0.98656 1.13839 1.43734 1.04780 1.06786 1.63137 1.18119 0.82356 1.04334 0.96264 1.21355 0.97339 0.98051 0.95154 1.21553 0.91055 0.99176 1.00305 1.21603 1.02143 0.94799 0.90862 1.21453 0.90736 1.01157 1.02671 1.18475 0.94089 0.98607 0.84104 1.91472 1.87325 1.79548 1.54906 0.90298 0.75607 0.84752 0.80584 0.79838 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -46.24 11.95 21.89 0.26 -45.98 15 2 C 0.03 1.56 5.50 85.36 0.47 2.03 15 3 Si 1.00 39.92 29.56 68.60 2.03 41.95 15 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 15 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 7 C -0.46 -26.64 9.04 23.20 0.21 -26.43 15 8 H 0.09 4.60 7.55 -2.91 -0.02 4.58 15 9 C 0.32 19.11 7.30 133.37 0.97 20.09 15 10 N -0.40 -25.98 10.53 -55.03 -0.58 -26.56 15 11 N -0.35 -20.45 12.21 -59.59 -0.73 -21.18 15 12 C 0.07 3.34 12.63 179.90 2.27 5.62 15 13 N -0.49 -24.61 2.69 -347.75 -0.94 -25.54 15 14 C 0.08 3.28 5.47 38.17 0.21 3.49 15 15 C -0.10 -2.93 9.92 22.39 0.22 -2.71 15 16 C -0.10 -1.95 10.04 22.26 0.22 -1.73 15 17 C -0.08 -1.31 10.04 22.29 0.22 -1.08 15 18 C -0.14 -3.49 10.02 22.29 0.22 -3.27 15 19 C 0.07 2.54 7.04 22.49 0.16 2.70 15 20 F -0.15 -6.95 16.91 44.97 0.76 -6.19 15 21 H 0.29 15.14 8.29 -92.71 -0.77 14.37 15 22 H 0.23 8.55 8.06 -2.91 -0.02 8.52 15 23 H 0.13 3.84 8.06 -2.91 -0.02 3.82 15 24 H 0.18 1.84 8.06 -2.91 -0.02 1.81 15 25 H 0.18 1.38 8.06 -2.91 -0.02 1.36 15 26 H 0.16 3.10 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -81.52 248.31 7.21 -74.31 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.21 Total: 10.50 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.18 Total: -1.30 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -1.98 Total: -119.26 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.76 Total: -6.19 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -81.52 7.21 -74.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972381.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.023 kcal (2) G-P(sol) polarization free energy of solvation -81.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds