Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86808 * 119.99652 * 2 1 4 4 H 1.48504 * 109.46682 * 239.99892 * 3 2 1 5 5 H 1.48503 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47180 * 119.99627 * 3 2 1 7 7 C 1.38649 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00123 * 0.27950 * 7 2 1 10 10 C 1.35749 * 117.00400 * 174.66062 * 9 7 2 11 11 C 1.38976 * 120.05618 * 5.59795 * 10 9 7 12 12 C 1.38118 * 120.06894 * 179.75926 * 11 10 9 13 13 C 1.38211 * 120.16849 * 0.50283 * 12 11 10 14 14 C 1.38912 * 120.03571 * 359.76674 * 13 12 11 15 15 C 1.38674 * 120.06048 * 185.87338 * 10 9 7 16 16 C 1.50653 * 120.18904 * 359.96280 * 15 10 9 17 17 C 1.52904 * 109.52659 * 146.07856 * 16 15 10 18 18 C 1.50503 * 109.89595 * 48.54305 * 17 16 15 19 19 O 1.21286 * 119.61289 * 144.84769 * 18 17 16 20 20 N 1.34556 * 120.76332 * 324.86729 * 18 17 16 21 21 H 0.97004 * 120.00640 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.96520 * 359.97057 * 11 10 9 23 23 H 1.08000 * 119.91780 * 180.24486 * 12 11 10 24 24 H 1.08001 * 119.98838 * 179.73904 * 13 12 11 25 25 H 1.08999 * 109.46069 * 266.09621 * 16 15 10 26 26 H 1.09001 * 109.45836 * 26.07497 * 16 15 10 27 27 H 1.09003 * 109.40074 * 168.67692 * 17 16 15 28 28 H 1.09005 * 109.40059 * 288.41183 * 17 16 15 29 29 H 0.96997 * 119.77070 * 180.79500 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3684 -0.0046 10 6 2.0701 -3.5040 -0.1163 11 6 3.4583 -3.4387 -0.1018 12 6 4.2066 -4.5945 -0.2105 13 6 3.5788 -5.8185 -0.3444 14 6 2.1916 -5.8898 -0.3652 15 6 1.4375 -4.7307 -0.2509 16 6 -0.0668 -4.8090 -0.2729 17 6 -0.5062 -5.9392 -1.2042 18 6 0.2672 -7.1916 -0.8902 19 8 -0.2754 -8.2717 -0.9891 20 7 1.5535 -7.1266 -0.5007 21 1 -0.4851 0.8400 -0.0004 22 1 3.9524 -2.4835 -0.0020 23 1 5.2852 -4.5413 -0.1949 24 1 4.1668 -6.7200 -0.4333 25 1 -0.4350 -5.0044 0.7343 26 1 -0.4744 -3.8638 -0.6316 27 1 -1.5712 -6.1275 -1.0677 28 1 -0.3209 -5.6489 -2.2384 29 1 2.0418 -7.9435 -0.3131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -47.259123 kcal Electronic energy + Delta-G solvation = -15843.532456 eV Core-core repulsion = 13117.789140 eV Total energy + Delta-G solvation = -2725.743316 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50318 -38.78007 -36.91967 -34.46418 -33.28396 -32.22017 -29.08788 -28.38965 -25.42936 -24.09667 -22.35579 -21.61996 -19.16258 -18.20840 -17.21234 -16.67244 -15.78149 -15.56072 -14.72481 -14.44368 -14.28270 -13.95827 -13.79016 -13.20819 -12.73830 -12.35416 -12.05703 -11.94629 -11.75629 -11.15746 -11.07920 -10.91822 -10.63929 -10.54212 -9.98892 -9.74400 -9.42013 -8.91124 -7.65827 -7.28881 -6.54863 -4.14289 1.78155 2.16068 2.89405 3.08008 3.09897 3.12047 3.36301 3.89154 4.40605 4.71401 4.99300 5.11584 5.25014 5.34826 5.54220 5.66095 5.73962 6.03719 6.07320 6.20783 6.29139 6.34724 6.65649 6.79393 6.95347 7.04419 7.21825 7.27121 7.39094 7.70633 7.89188 8.26722 8.90646 9.56394 10.62350 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.007238 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.065013 B = 3867.786562 C = 4559.650678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.167 6.167 10 C 0.181 3.819 11 C -0.247 4.247 12 C -0.048 4.048 13 C -0.240 4.240 14 C 0.190 3.810 15 C -0.196 4.196 16 C -0.061 4.061 17 C -0.136 4.136 18 C 0.524 3.476 19 O -0.549 6.549 20 N -0.659 5.659 21 H 0.272 0.728 22 H 0.131 0.869 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -5.873 -0.897 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.070 6.070 10 C 0.125 3.875 11 C -0.266 4.266 12 C -0.067 4.067 13 C -0.262 4.262 14 C 0.095 3.905 15 C -0.199 4.199 16 C -0.098 4.098 17 C -0.175 4.175 18 C 0.314 3.686 19 O -0.426 6.426 20 N -0.303 5.303 21 H 0.082 0.918 22 H 0.148 0.852 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.518 -6.091 -0.982 7.102 hybrid contribution 0.951 0.511 0.104 1.085 sum 4.469 -5.580 -0.878 7.203 Atomic orbital electron populations 1.70010 1.05950 1.28008 1.45329 1.25282 0.95849 0.98829 0.96296 0.85778 0.78744 0.79676 0.79251 1.19444 1.20249 1.19446 1.21309 0.91894 0.80592 1.53261 0.88918 1.83944 1.34212 1.11323 1.77486 1.18765 0.89909 0.87201 0.91589 1.21160 0.93544 0.99208 1.12729 1.20542 0.98609 0.91563 0.96009 1.20196 0.91481 0.98126 1.16376 1.17163 0.91407 0.83564 0.98349 1.18385 0.94928 0.90161 1.16472 1.20095 0.91911 0.98812 0.99020 1.21700 1.00574 0.92586 1.02675 1.20896 0.81382 0.91594 0.74776 1.90713 1.68458 1.30932 1.52544 1.43528 1.12543 1.08110 1.66119 0.91814 0.85176 0.86795 0.87045 0.91309 0.88381 0.87998 0.88209 0.75786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.76 13.67 55.48 0.76 -23.01 15 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 15 3 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 15 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.39 -10.30 9.49 30.88 0.29 -10.01 15 8 H 0.09 2.23 5.20 -52.49 -0.27 1.96 15 9 O -0.17 -4.38 8.75 0.05 0.00 -4.38 15 10 C 0.18 4.04 6.62 -39.15 -0.26 3.78 15 11 C -0.25 -4.94 9.17 -39.35 -0.36 -5.30 15 12 C -0.05 -0.81 10.03 -39.64 -0.40 -1.21 15 13 C -0.24 -3.87 9.92 -39.34 -0.39 -4.26 15 14 C 0.19 3.31 6.50 -83.77 -0.54 2.76 15 15 C -0.20 -3.87 5.67 -104.29 -0.59 -4.46 15 16 C -0.06 -1.11 5.82 -27.96 -0.16 -1.27 15 17 C -0.14 -2.11 6.08 -28.03 -0.17 -2.28 15 18 C 0.52 8.82 7.72 -11.18 -0.09 8.73 15 19 O -0.55 -10.48 17.91 5.55 0.10 -10.38 15 20 N -0.66 -10.29 5.36 -10.02 -0.05 -10.34 15 21 H 0.27 6.95 8.31 -40.82 -0.34 6.62 15 22 H 0.13 2.59 5.64 -52.48 -0.30 2.30 15 23 H 0.11 1.56 8.06 -52.49 -0.42 1.13 15 24 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.10 1.94 7.43 -51.93 -0.39 1.56 15 27 H 0.10 1.41 8.14 -51.93 -0.42 0.98 15 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 15 29 H 0.41 5.37 8.83 -40.82 -0.36 5.01 15 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -29.48 255.02 -5.71 -35.19 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.56 Total: 7.14 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.77 Total: -12.50 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.70 Total: -33.35 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.10 Total: -14.77 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.48 -5.71 -35.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.073 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds