Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86808 * 119.99652 * 2 1 4 4 H 1.48504 * 109.46682 * 239.99892 * 3 2 1 5 5 H 1.48503 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47180 * 119.99627 * 3 2 1 7 7 C 1.38649 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00123 * 0.27950 * 7 2 1 10 10 C 1.35749 * 117.00400 * 174.66062 * 9 7 2 11 11 C 1.38976 * 120.05618 * 5.59795 * 10 9 7 12 12 C 1.38118 * 120.06894 * 179.75926 * 11 10 9 13 13 C 1.38211 * 120.16849 * 0.50283 * 12 11 10 14 14 C 1.38912 * 120.03571 * 359.76674 * 13 12 11 15 15 C 1.38674 * 120.06048 * 185.87338 * 10 9 7 16 16 C 1.50653 * 120.18904 * 359.96280 * 15 10 9 17 17 C 1.52904 * 109.52659 * 146.07856 * 16 15 10 18 18 C 1.50503 * 109.89595 * 48.54305 * 17 16 15 19 19 O 1.21286 * 119.61289 * 144.84769 * 18 17 16 20 20 N 1.34556 * 120.76332 * 324.86729 * 18 17 16 21 21 H 0.97004 * 120.00640 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.96520 * 359.97057 * 11 10 9 23 23 H 1.08000 * 119.91780 * 180.24486 * 12 11 10 24 24 H 1.08001 * 119.98838 * 179.73904 * 13 12 11 25 25 H 1.08999 * 109.46069 * 266.09621 * 16 15 10 26 26 H 1.09001 * 109.45836 * 26.07497 * 16 15 10 27 27 H 1.09003 * 109.40074 * 168.67692 * 17 16 15 28 28 H 1.09005 * 109.40059 * 288.41183 * 17 16 15 29 29 H 0.96997 * 119.77070 * 180.79500 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3684 -0.0046 10 6 2.0701 -3.5040 -0.1163 11 6 3.4583 -3.4387 -0.1018 12 6 4.2066 -4.5945 -0.2105 13 6 3.5788 -5.8185 -0.3444 14 6 2.1916 -5.8898 -0.3652 15 6 1.4375 -4.7307 -0.2509 16 6 -0.0668 -4.8090 -0.2729 17 6 -0.5062 -5.9392 -1.2042 18 6 0.2672 -7.1916 -0.8902 19 8 -0.2754 -8.2717 -0.9891 20 7 1.5535 -7.1266 -0.5007 21 1 -0.4851 0.8400 -0.0004 22 1 3.9524 -2.4835 -0.0020 23 1 5.2852 -4.5413 -0.1949 24 1 4.1668 -6.7200 -0.4333 25 1 -0.4350 -5.0044 0.7343 26 1 -0.4744 -3.8638 -0.6316 27 1 -1.5712 -6.1275 -1.0677 28 1 -0.3209 -5.6489 -2.2384 29 1 2.0418 -7.9435 -0.3131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = -66.812784 kcal Electronic energy + Delta-G solvation = -15844.380366 eV Core-core repulsion = 13117.789140 eV Total energy + Delta-G solvation = -2726.591226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94013 -40.35381 -38.50384 -35.91761 -34.78827 -34.00203 -30.54677 -29.89292 -27.28818 -25.51488 -23.81918 -23.15367 -20.70344 -19.74609 -18.86083 -18.10686 -17.30638 -17.02742 -16.24577 -16.05491 -15.86961 -15.56656 -15.26659 -14.63956 -14.34704 -13.80565 -13.57949 -13.49929 -13.36606 -12.69852 -12.58252 -12.38113 -12.14678 -12.10808 -11.44910 -11.27376 -11.00972 -10.72195 -9.17004 -8.82878 -8.43464 -6.10952 0.30531 0.67439 1.39536 1.45791 1.53594 1.54651 2.02717 2.22219 2.83622 3.17405 3.28997 3.58407 3.85888 3.93820 4.22373 4.30245 4.36697 4.55804 4.69247 4.75163 4.87619 4.93214 5.17043 5.26440 5.31912 5.63846 5.68588 5.74914 5.97511 6.04425 6.25377 6.95524 7.01859 7.79186 8.78363 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.007238 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.065013 B = 3867.786562 C = 4559.650678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.216 6.216 10 C 0.145 3.855 11 C -0.259 4.259 12 C -0.041 4.041 13 C -0.214 4.214 14 C 0.190 3.810 15 C -0.208 4.208 16 C -0.058 4.058 17 C -0.129 4.129 18 C 0.527 3.473 19 O -0.568 6.568 20 N -0.647 5.647 21 H 0.272 0.728 22 H 0.125 0.875 23 H 0.156 0.844 24 H 0.156 0.844 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -7.494 -1.180 10.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.121 6.121 10 C 0.093 3.907 11 C -0.279 4.279 12 C -0.060 4.060 13 C -0.235 4.235 14 C 0.094 3.906 15 C -0.212 4.212 16 C -0.095 4.095 17 C -0.168 4.168 18 C 0.317 3.683 19 O -0.448 6.448 20 N -0.291 5.291 21 H 0.081 0.919 22 H 0.142 0.858 23 H 0.173 0.827 24 H 0.173 0.827 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.936 -7.776 -1.263 9.864 hybrid contribution 0.336 0.693 0.182 0.791 sum 6.272 -7.083 -1.081 9.522 Atomic orbital electron populations 1.70157 1.07865 1.28796 1.48471 1.26466 0.96747 1.02464 0.95875 0.84711 0.77430 0.74659 0.79870 1.18250 1.20047 1.18261 1.21789 0.92632 0.81266 1.53201 0.87846 1.83924 1.35508 1.12218 1.80461 1.19297 0.91226 0.87124 0.93030 1.21335 0.92863 1.00567 1.13105 1.20980 1.00543 0.90367 0.94075 1.20743 0.90962 0.99543 1.12231 1.17254 0.92089 0.83333 0.97875 1.18686 0.95899 0.90384 1.16230 1.20001 0.91371 0.98605 0.99555 1.21679 1.01585 0.91079 1.02465 1.20952 0.81644 0.91343 0.74344 1.90716 1.68895 1.31615 1.53550 1.43383 1.12268 1.08062 1.65422 0.91910 0.85769 0.82661 0.82663 0.91370 0.91088 0.86163 0.87180 0.74010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 13.67 21.61 0.30 -53.13 15 2 C -0.02 -0.92 5.49 84.83 0.47 -0.46 15 3 Si 1.01 40.74 29.55 68.60 2.03 42.76 15 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 15 6 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 7 C -0.41 -22.46 9.49 67.92 0.64 -21.82 15 8 H 0.10 5.12 5.20 -2.91 -0.02 5.10 15 9 O -0.22 -11.92 8.75 -22.75 -0.20 -12.12 15 10 C 0.15 6.62 6.62 22.55 0.15 6.77 15 11 C -0.26 -10.14 9.17 22.42 0.21 -9.94 15 12 C -0.04 -1.22 10.03 22.23 0.22 -1.00 15 13 C -0.21 -5.86 9.92 22.42 0.22 -5.64 15 14 C 0.19 6.07 6.50 38.15 0.25 6.32 15 15 C -0.21 -8.17 5.67 -19.65 -0.11 -8.29 15 16 C -0.06 -2.14 5.82 29.80 0.17 -1.96 15 17 C -0.13 -3.86 6.08 29.75 0.18 -3.68 15 18 C 0.53 16.56 7.72 87.63 0.68 17.23 15 19 O -0.57 -20.43 17.91 -3.05 -0.05 -20.49 15 20 N -0.65 -18.11 5.36 -304.12 -1.63 -19.74 15 21 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 22 H 0.12 4.93 5.64 -2.91 -0.02 4.91 15 23 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.16 3.01 8.06 -2.91 -0.02 2.98 15 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.07 3.01 7.43 -2.39 -0.02 2.99 15 27 H 0.12 3.17 8.14 -2.39 -0.02 3.15 15 28 H 0.11 3.10 8.14 -2.38 -0.02 3.08 15 29 H 0.42 9.39 8.83 -92.71 -0.82 8.57 15 Total: -1.00 -66.79 255.02 3.89 -62.90 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.38 Total: 22.26 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 3.08 Total: -22.45 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.34 Total: -72.87 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.25 Total: -32.61 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -66.79 3.89 -62.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.913 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds