Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48496 * 109.46736 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46818 * 300.00121 * 3 2 1 6 6 H 1.48499 * 109.47037 * 60.00140 * 3 2 1 7 7 C 1.37877 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47113 * 179.97438 * 9 7 2 11 11 N 1.32801 * 119.14315 * 89.99790 * 10 9 7 12 12 N 1.28906 * 122.16428 * 179.97438 * 11 10 9 13 13 C 1.33611 * 119.69592 * 0.02562 * 12 11 10 14 14 C 1.40511 * 121.84028 * 179.97438 * 13 12 11 15 15 C 1.36048 * 119.62068 * 180.02562 * 14 13 12 16 16 C 1.39686 * 121.00592 * 0.28091 * 15 14 13 17 17 F 1.35099 * 119.52098 * 179.69372 * 16 15 14 18 18 C 1.36411 * 120.95638 * 359.42836 * 16 15 14 19 19 C 1.40223 * 119.56887 * 0.56003 * 18 16 15 20 20 N 1.31357 * 119.14523 * 269.98108 * 10 9 7 21 21 H 0.96999 * 119.99936 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47580 * 59.99953 * 9 7 2 23 23 H 1.09001 * 109.47258 * 299.99606 * 9 7 2 24 24 H 1.08002 * 120.19086 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.49321 * 179.97438 * 15 14 13 26 26 H 1.07997 * 120.21577 * 180.28005 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.6507 -4.1361 1.1604 12 7 3.4868 -5.1149 1.2284 13 6 3.9560 -5.6638 0.1042 14 6 4.8690 -6.7317 0.1257 15 6 5.3180 -7.2562 -1.0465 16 6 4.8897 -6.7455 -2.2741 17 9 5.3597 -7.2852 -3.4200 18 6 3.9998 -5.7134 -2.3327 19 6 3.5161 -5.1485 -1.1440 20 7 2.6458 -4.1311 -1.1467 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 5.2123 -7.1339 1.0675 25 1 6.0200 -8.0767 -1.0276 26 1 3.6733 -5.3308 -3.2885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989536.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = 42.602953 kcal Electronic energy + Delta-G solvation = -14993.154749 eV Core-core repulsion = 12180.140592 eV Total energy + Delta-G solvation = -2813.014157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.23425 -41.59846 -37.80908 -35.13482 -33.41368 -31.65862 -30.97258 -28.47824 -25.77593 -24.60011 -22.75106 -22.32980 -19.00586 -18.95883 -17.06739 -16.63740 -16.23940 -15.97464 -15.07825 -14.87681 -14.50048 -14.14731 -13.75505 -12.91764 -12.55804 -12.22867 -11.99368 -11.92640 -11.59806 -11.47474 -11.12519 -10.79524 -10.72182 -10.03006 -9.69521 -9.06017 -8.93018 -8.65142 -8.54242 -6.17908 -4.22162 -0.10747 0.53904 1.73808 2.65049 3.25550 3.32696 3.37621 3.69288 3.93476 4.03545 4.14978 4.20946 4.37197 4.59501 4.77081 5.06774 5.18686 5.33114 5.53690 5.64993 5.77208 5.78920 6.31235 6.49796 7.16391 7.28261 7.48522 7.74367 8.03407 8.76947 8.81463 9.40954 10.92819 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.005983 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.789562 B = 4678.990187 C = 4954.282068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.079 3.921 10 C 0.310 3.690 11 N -0.250 5.250 12 N -0.147 5.147 13 C -0.031 4.031 14 C -0.020 4.020 15 C -0.151 4.151 16 C 0.142 3.858 17 F -0.130 7.130 18 C -0.137 4.137 19 C 0.159 3.841 20 N -0.453 5.453 21 H 0.266 0.734 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 -13.487 -2.864 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.039 3.961 10 C 0.045 3.955 11 N -0.109 5.109 12 N -0.010 5.010 13 C -0.164 4.164 14 C -0.042 4.042 15 C -0.173 4.173 16 C 0.118 3.882 17 F -0.108 7.108 18 C -0.157 4.157 19 C 0.020 3.980 20 N -0.175 5.175 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.171 0.829 25 H 0.167 0.833 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.454 -12.926 -2.157 15.595 hybrid contribution 0.888 0.466 -1.021 1.431 sum 9.342 -12.460 -3.178 15.894 Atomic orbital electron populations 1.69941 1.05975 1.27234 1.49445 1.24922 0.94982 0.99290 0.94614 0.86340 0.79930 0.82822 0.77800 1.19751 1.20704 1.20614 1.20764 0.92843 0.88961 1.52593 0.92608 1.18401 0.90947 0.86158 1.00545 1.26039 0.92598 0.93573 0.83336 1.73920 1.06206 1.04260 1.26555 1.74386 1.01373 1.01293 1.23941 1.20863 1.01867 1.00547 0.93094 1.20612 0.92576 0.91994 0.99045 1.20954 1.03141 1.02702 0.90461 1.17407 0.95063 0.93599 0.82108 1.91543 1.86711 1.84663 1.47921 1.20619 0.98989 0.97075 0.99029 1.19358 0.93142 0.92551 0.92928 1.69428 1.09709 1.07880 1.30468 0.92472 0.92597 0.92429 0.82863 0.83307 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.08 2.04 5.41 -29.03 -0.16 1.88 15 10 C 0.31 7.21 6.88 -156.69 -1.08 6.13 15 11 N -0.25 -5.58 11.47 32.44 0.37 -5.21 15 12 N -0.15 -2.83 11.67 32.25 0.38 -2.45 15 13 C -0.03 -0.51 6.68 -84.78 -0.57 -1.07 15 14 C -0.02 -0.24 10.01 -39.51 -0.40 -0.63 15 15 C -0.15 -1.49 9.92 -39.83 -0.40 -1.88 15 16 C 0.14 1.66 7.24 -39.70 -0.29 1.37 15 17 F -0.13 -1.45 17.24 2.25 0.04 -1.41 15 18 C -0.14 -1.94 9.97 -39.50 -0.39 -2.33 15 19 C 0.16 2.84 6.60 -84.78 -0.56 2.28 15 20 N -0.45 -9.74 10.43 -8.61 -0.09 -9.83 15 21 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.06 1.49 8.14 -51.93 -0.42 1.06 15 23 H 0.06 1.53 8.14 -51.93 -0.42 1.10 15 24 H 0.15 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.15 0.94 8.06 -52.49 -0.42 0.52 15 26 H 0.16 2.04 8.06 -52.49 -0.42 1.62 15 LS Contribution 248.73 15.07 3.75 3.75 Total: -1.00 -30.08 248.73 -5.74 -35.81 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -1.65 Total: -5.08 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -4.24 Total: -7.18 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 1.39 Total: -42.22 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.08 -5.74 -35.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989536.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.416 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds