Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48496 * 109.46736 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46818 * 300.00121 * 3 2 1 6 6 H 1.48499 * 109.47037 * 60.00140 * 3 2 1 7 7 C 1.37877 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47113 * 179.97438 * 9 7 2 11 11 N 1.32801 * 119.14315 * 89.99790 * 10 9 7 12 12 N 1.28906 * 122.16428 * 179.97438 * 11 10 9 13 13 C 1.33611 * 119.69592 * 0.02562 * 12 11 10 14 14 C 1.40511 * 121.84028 * 179.97438 * 13 12 11 15 15 C 1.36048 * 119.62068 * 180.02562 * 14 13 12 16 16 C 1.39686 * 121.00592 * 0.28091 * 15 14 13 17 17 F 1.35099 * 119.52098 * 179.69372 * 16 15 14 18 18 C 1.36411 * 120.95638 * 359.42836 * 16 15 14 19 19 C 1.40223 * 119.56887 * 0.56003 * 18 16 15 20 20 N 1.31357 * 119.14523 * 269.98108 * 10 9 7 21 21 H 0.96999 * 119.99936 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47580 * 59.99953 * 9 7 2 23 23 H 1.09001 * 109.47258 * 299.99606 * 9 7 2 24 24 H 1.08002 * 120.19086 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.49321 * 179.97438 * 15 14 13 26 26 H 1.07997 * 120.21577 * 180.28005 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.6507 -4.1361 1.1604 12 7 3.4868 -5.1149 1.2284 13 6 3.9560 -5.6638 0.1042 14 6 4.8690 -6.7317 0.1257 15 6 5.3180 -7.2562 -1.0465 16 6 4.8897 -6.7455 -2.2741 17 9 5.3597 -7.2852 -3.4200 18 6 3.9998 -5.7134 -2.3327 19 6 3.5161 -5.1485 -1.1440 20 7 2.6458 -4.1311 -1.1467 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 5.2123 -7.1339 1.0675 25 1 6.0200 -8.0767 -1.0276 26 1 3.6733 -5.3308 -3.2885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989536.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = 22.568613 kcal Electronic energy + Delta-G solvation = -14994.023503 eV Core-core repulsion = 12180.140592 eV Total energy + Delta-G solvation = -2813.882912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.22808 -43.01252 -39.02697 -36.66124 -35.33617 -33.23650 -32.17973 -30.22390 -27.19106 -26.30085 -24.08639 -23.85904 -20.38339 -20.18732 -18.74775 -18.20205 -17.42612 -17.11506 -16.69295 -16.47073 -15.66942 -15.48137 -14.65700 -14.51228 -14.38472 -13.78903 -13.47258 -13.32204 -13.26890 -13.07742 -12.68024 -12.64781 -12.36596 -11.94071 -11.59289 -10.69249 -10.44650 -10.39808 -9.85009 -8.30100 -6.42947 -1.36426 -0.76846 0.47409 1.37750 1.39317 1.46740 1.53172 2.33932 2.45313 2.52624 2.65067 2.92575 3.02370 3.06249 3.41140 3.68386 3.95502 4.06636 4.29752 4.68859 4.72961 4.79782 4.86626 5.14257 5.19077 5.45574 5.58056 5.89638 5.95369 6.61186 7.24094 7.29524 8.81580 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.005983 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.789562 B = 4678.990187 C = 4954.282068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.044 0.956 9 C 0.090 3.910 10 C 0.289 3.711 11 N -0.288 5.288 12 N -0.155 5.155 13 C -0.032 4.032 14 C -0.017 4.017 15 C -0.117 4.117 16 C 0.176 3.824 17 F -0.117 7.117 18 C -0.161 4.161 19 C 0.144 3.856 20 N -0.479 5.479 21 H 0.271 0.729 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.192 0.808 25 H 0.204 0.796 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -15.568 -3.508 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.063 0.937 9 C 0.051 3.949 10 C 0.021 3.979 11 N -0.146 5.146 12 N -0.016 5.016 13 C -0.167 4.167 14 C -0.038 4.038 15 C -0.137 4.137 16 C 0.152 3.848 17 F -0.095 7.095 18 C -0.181 4.181 19 C 0.005 3.995 20 N -0.201 5.201 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.209 0.791 25 H 0.221 0.779 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.412 -15.009 -2.772 19.057 hybrid contribution 0.169 0.782 -0.994 1.276 sum 11.581 -14.226 -3.766 18.727 Atomic orbital electron populations 1.70042 1.07399 1.28479 1.49850 1.25817 0.95898 1.02842 0.93865 0.85290 0.78379 0.78270 0.78420 1.19678 1.19562 1.19500 1.20969 0.92463 0.90521 1.53116 0.93728 1.17969 0.91243 0.87346 0.98362 1.25253 0.93878 0.94240 0.84494 1.73782 1.08364 1.06240 1.26183 1.74230 1.01181 1.00834 1.25314 1.21486 1.02158 1.01358 0.91707 1.21060 0.91012 0.90131 1.01639 1.21502 1.01662 1.02271 0.88301 1.17516 0.92603 0.91521 0.83201 1.91595 1.86122 1.84086 1.47742 1.20653 1.00767 0.98734 0.97989 1.19797 0.92814 0.91993 0.94889 1.69235 1.11266 1.09656 1.29981 0.91956 0.94763 0.94577 0.79082 0.77891 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 13.29 21.45 0.28 -54.27 15 2 C 0.02 0.90 5.46 84.65 0.46 1.36 15 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.53 -31.29 9.09 25.60 0.23 -31.05 15 8 H 0.04 2.65 7.74 -2.91 -0.02 2.63 15 9 C 0.09 5.04 5.41 29.10 0.16 5.20 15 10 C 0.29 14.31 6.88 138.58 0.95 15.26 15 11 N -0.29 -13.54 11.47 -51.29 -0.59 -14.13 15 12 N -0.16 -6.03 11.67 -51.88 -0.61 -6.63 15 13 C -0.03 -1.00 6.68 40.37 0.27 -0.73 15 14 C -0.02 -0.31 10.01 22.31 0.22 -0.09 15 15 C -0.12 -1.54 9.92 22.11 0.22 -1.32 15 16 C 0.18 3.28 7.24 22.19 0.16 3.44 15 17 F -0.12 -2.01 17.24 44.97 0.78 -1.24 15 18 C -0.16 -4.26 9.97 22.33 0.22 -4.04 15 19 C 0.14 5.11 6.60 40.25 0.27 5.37 15 20 N -0.48 -21.63 10.43 -181.16 -1.89 -23.52 15 21 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 22 H 0.03 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.04 2.09 8.14 -2.39 -0.02 2.08 15 24 H 0.19 2.16 8.06 -2.91 -0.02 2.14 15 25 H 0.20 0.73 8.06 -2.91 -0.02 0.70 15 26 H 0.16 4.03 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -70.41 248.73 4.39 -66.02 By element: Atomic # 1 Polarization: -7.49 SS G_CDS: 1.22 Total: -6.27 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.17 Total: -6.60 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -2.80 Total: -98.55 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.41 4.39 -66.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989536.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.587 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds