Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86807 * 119.99896 * 2 1 4 4 H 1.48491 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47131 * 300.00234 * 3 2 1 6 6 H 1.48506 * 109.46819 * 60.00134 * 3 2 1 7 7 C 1.40208 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00410 * 179.97438 * 7 2 1 9 9 C 1.41256 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.30634 * 123.22787 * 359.97370 * 9 7 2 11 11 C 1.47581 * 108.34028 * 180.64673 * 10 9 7 12 12 C 1.54777 * 102.10696 * 14.99547 * 11 10 9 13 13 H 1.09005 * 111.02427 * 94.42713 * 12 11 10 14 14 C 1.50702 * 111.01556 * 218.27200 * 12 11 10 15 15 C 1.38163 * 120.03163 * 95.02455 * 14 12 11 16 16 C 1.38245 * 120.05956 * 179.97438 * 15 14 12 17 17 C 1.38285 * 120.10902 * 359.96890 * 16 15 14 18 18 C 1.38122 * 120.05753 * 359.77508 * 17 16 15 19 19 C 1.38713 * 120.02742 * 274.99662 * 14 12 11 20 20 O 1.35896 * 120.05479 * 0.02719 * 19 14 12 21 21 O 1.35202 * 123.22617 * 179.97438 * 9 7 2 22 22 H 0.97001 * 119.99417 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.90877 * 256.78923 * 11 10 9 24 24 H 1.09009 * 110.92932 * 133.20747 * 11 10 9 25 25 H 1.08008 * 119.97013 * 359.95028 * 15 14 12 26 26 H 1.08007 * 119.94120 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.96977 * 180.02562 * 17 16 15 28 28 H 1.07995 * 120.02695 * 180.27697 * 18 17 16 29 29 H 0.96700 * 114.00170 * 89.99949 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7000 1.3465 -0.0006 5 1 1.8813 2.3965 -1.2125 6 1 1.8813 2.3965 1.2126 7 6 2.0072 -1.2142 -0.0005 8 1 3.0872 -1.2143 -0.0010 9 6 1.3009 -2.4375 -0.0005 10 7 -0.0034 -2.5111 0.0004 11 6 -0.3881 -3.9358 0.0159 12 6 0.9386 -4.6260 0.4148 13 1 0.9851 -4.7914 1.4912 14 6 1.1218 -5.9197 -0.3362 15 6 1.8632 -5.9436 -1.5018 16 6 2.0321 -7.1301 -2.1909 17 6 1.4603 -8.2959 -1.7153 18 6 0.7227 -8.2784 -0.5477 19 6 0.5467 -7.0877 0.1426 20 8 -0.1830 -7.0669 1.2888 21 8 1.9099 -3.6446 -0.0016 22 1 -0.4849 0.8401 0.0004 23 1 -0.7143 -4.2614 -0.9719 24 1 -1.1625 -4.1220 0.7602 25 1 2.3109 -5.0343 -1.8752 26 1 2.6118 -7.1465 -3.1021 27 1 1.5941 -9.2217 -2.2552 28 1 0.2801 -9.1900 -0.1744 29 1 -1.1244 -6.8931 1.1527 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003870.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = -56.018725 kcal Electronic energy + Delta-G solvation = -15780.642085 eV Core-core repulsion = 13054.518925 eV Total energy + Delta-G solvation = -2726.123160 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71967 -40.26466 -37.59314 -35.64599 -33.56914 -33.05399 -30.95424 -29.95198 -27.35283 -24.26535 -23.60466 -22.48944 -21.69034 -19.36337 -18.77762 -17.76718 -17.30637 -17.18962 -16.29180 -16.03972 -15.68415 -15.12666 -14.85692 -14.30552 -13.88368 -13.62628 -13.43935 -13.17979 -13.01626 -12.82655 -12.49718 -12.42489 -12.23512 -11.85545 -11.45253 -11.10425 -10.23845 -9.76495 -9.53493 -9.41382 -8.44417 -6.82469 0.21080 0.32250 1.38202 1.43104 1.61068 2.07770 2.23698 2.60155 2.93469 3.25672 3.27936 3.73525 3.88945 3.96826 4.12926 4.22633 4.48045 4.57040 4.59333 4.80973 4.87927 4.92872 5.01818 5.29514 5.37362 5.44747 5.50060 5.77948 5.89657 6.09502 6.67168 6.75823 6.84089 7.98349 8.49232 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.049930 B = 0.006308 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.653056 B = 4437.494041 C = 4767.839505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.030 3.970 3 Si 1.005 2.995 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.484 4.484 8 H 0.088 0.912 9 C 0.354 3.646 10 N -0.638 5.638 11 C 0.020 3.980 12 C 0.095 3.905 13 H 0.073 0.927 14 C -0.124 4.124 15 C -0.107 4.107 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.141 4.141 19 C 0.104 3.896 20 O -0.506 6.506 21 O -0.379 6.379 22 H 0.282 0.718 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.151 0.849 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -12.104 -2.796 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.190 4.190 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.107 0.893 9 C 0.154 3.846 10 N -0.385 5.385 11 C -0.111 4.111 12 C 0.037 3.963 13 H 0.091 0.909 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.160 4.160 19 C 0.059 3.941 20 O -0.319 6.319 21 O -0.288 6.288 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.177 0.823 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.823 -11.785 -2.584 12.093 hybrid contribution 0.045 0.325 0.055 0.333 sum 0.868 -11.460 -2.529 11.768 Atomic orbital electron populations 1.70132 1.09016 1.29471 1.31175 1.26891 0.95795 1.04201 0.92144 0.84834 0.78998 0.74781 0.78980 1.17696 1.18747 1.18771 1.19097 0.94626 0.87507 1.50995 0.89338 1.22392 0.88596 0.84655 0.88961 1.76126 1.09491 1.10554 1.42309 1.23749 0.96025 0.92336 0.99012 1.22404 0.89619 0.87144 0.97168 0.90899 1.20092 1.02271 0.93185 0.96963 1.20997 0.97872 0.99350 0.94316 1.21473 1.00519 0.91706 1.00790 1.21479 0.95558 0.99122 0.95319 1.21660 1.01451 0.97362 0.95489 1.18329 0.96848 0.91673 0.87246 1.84719 1.25265 1.93960 1.27961 1.86896 1.40578 1.17337 1.83945 0.90769 0.93819 0.90915 0.87643 0.83144 0.81475 0.82340 0.73532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.11 11.74 21.86 0.26 -43.85 15 2 C 0.03 1.62 5.50 85.35 0.47 2.09 15 3 Si 1.01 39.61 29.56 68.60 2.03 41.64 15 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 5 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 7 C -0.48 -28.17 9.50 23.49 0.22 -27.94 15 8 H 0.09 4.86 7.85 -2.91 -0.02 4.83 15 9 C 0.35 21.22 7.43 85.61 0.64 21.86 15 10 N -0.64 -38.29 9.69 -456.21 -4.42 -42.71 15 11 C 0.02 0.96 7.66 86.78 0.67 1.62 15 12 C 0.09 4.43 3.62 30.45 0.11 4.54 15 13 H 0.07 3.43 7.89 -2.38 -0.02 3.42 15 14 C -0.12 -4.77 5.09 -19.77 -0.10 -4.87 15 15 C -0.11 -3.86 9.40 22.25 0.21 -3.65 15 16 C -0.13 -3.32 10.04 22.28 0.22 -3.10 15 17 C -0.10 -2.05 10.04 22.25 0.22 -1.83 15 18 C -0.14 -3.33 9.99 22.37 0.22 -3.11 15 19 C 0.10 3.22 6.68 22.51 0.15 3.37 15 20 O -0.51 -14.54 12.76 -92.38 -1.18 -15.72 15 21 O -0.38 -20.81 9.67 -84.83 -0.82 -21.63 15 22 H 0.28 14.37 8.29 -92.71 -0.77 13.60 15 23 H 0.04 2.10 7.91 -2.39 -0.02 2.08 15 24 H 0.07 3.26 8.14 -2.38 -0.02 3.24 15 25 H 0.11 4.32 7.25 -2.91 -0.02 4.30 15 26 H 0.15 3.03 8.06 -2.91 -0.02 3.00 15 27 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 28 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 29 H 0.41 8.18 9.06 -74.06 -0.67 7.51 15 Total: -1.00 -73.05 260.25 -0.59 -73.64 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.51 Total: 19.64 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 3.03 Total: -11.02 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -4.16 Total: -86.55 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.00 Total: -37.34 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -73.05 -0.59 -73.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003870.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.618 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds