Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86798 * 119.99620 * 2 1 4 4 H 1.48502 * 109.46749 * 269.99836 * 3 2 1 5 5 H 1.48502 * 109.47221 * 29.99749 * 3 2 1 6 6 H 1.48495 * 109.47116 * 150.00104 * 3 2 1 7 7 C 1.40215 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.41263 * 120.00114 * 0.02562 * 7 2 1 10 10 N 1.30688 * 123.21484 * 359.97438 * 9 7 2 11 11 C 1.47585 * 108.30311 * 179.32875 * 10 9 7 12 12 C 1.54786 * 102.13678 * 345.04942 * 11 10 9 13 13 H 1.08998 * 111.01842 * 265.59713 * 12 11 10 14 14 C 1.50700 * 111.01813 * 141.70853 * 12 11 10 15 15 C 1.38169 * 120.02770 * 264.99902 * 14 12 11 16 16 C 1.38242 * 120.05764 * 179.97438 * 15 14 12 17 17 C 1.38291 * 120.10958 * 359.97438 * 16 15 14 18 18 C 1.38125 * 120.05510 * 359.97438 * 17 16 15 19 19 C 1.38708 * 120.02724 * 84.72531 * 14 12 11 20 20 O 1.35893 * 120.05743 * 359.97438 * 19 14 12 21 21 O 1.35194 * 123.21953 * 179.97438 * 9 7 2 22 22 H 0.96993 * 120.00473 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.90583 * 226.83072 * 11 10 9 24 24 H 1.09003 * 110.90627 * 103.27084 * 11 10 9 25 25 H 1.08004 * 119.97146 * 359.97438 * 15 14 12 26 26 H 1.07996 * 119.94657 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.97458 * 179.97438 * 17 16 15 28 28 H 1.08007 * 120.02599 * 180.02562 * 18 17 16 29 29 H 0.96701 * 114.00472 * 89.99697 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.4874 2.0464 -1.4001 5 1 1.4373 2.6527 0.7000 6 1 3.5375 1.4403 0.7000 7 6 2.0071 -1.2143 0.0005 8 1 3.0871 -1.2142 0.0001 9 6 1.3008 -2.4377 0.0005 10 7 -0.0040 -2.5110 0.0005 11 6 -0.3881 -3.9359 -0.0159 12 6 0.9385 -4.6260 -0.4152 13 1 0.9851 -4.7904 -1.4918 14 6 1.1220 -5.9199 0.3353 15 6 1.8634 -5.9439 1.5010 16 6 2.0316 -7.1303 2.1903 17 6 1.4583 -8.2958 1.7155 18 6 0.7154 -8.2769 0.5512 19 6 0.5421 -7.0866 -0.1405 20 8 -0.1926 -7.0645 -1.2835 21 8 1.9100 -3.6446 0.0005 22 1 -0.4850 0.8399 -0.0004 23 1 -1.1625 -4.1214 -0.7602 24 1 -0.7144 -4.2622 0.9717 25 1 2.3118 -5.0349 1.8740 26 1 2.6111 -7.1469 3.1015 27 1 1.5915 -9.2215 2.2555 28 1 0.2675 -9.1873 0.1811 29 1 0.3225 -7.2277 -2.0855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003871.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = -56.157858 kcal Electronic energy + Delta-G solvation = -15775.048727 eV Core-core repulsion = 13048.919533 eV Total energy + Delta-G solvation = -2726.129194 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71488 -40.26861 -37.59537 -35.64470 -33.57039 -33.05776 -30.95688 -29.94251 -27.34376 -24.28493 -23.62435 -22.43967 -21.68527 -19.43602 -18.80861 -17.59909 -17.37438 -17.22033 -16.33181 -15.96765 -15.65795 -15.17582 -14.84034 -14.29323 -13.88936 -13.58089 -13.48690 -13.19506 -13.00572 -12.79106 -12.49571 -12.40331 -12.25196 -11.89297 -11.44996 -11.09186 -10.23847 -9.75655 -9.54601 -9.41921 -8.43628 -6.82800 0.22100 0.32137 1.40007 1.43310 1.60315 2.08205 2.23922 2.63620 2.87874 3.25381 3.27710 3.74852 3.91417 3.97570 4.10913 4.21080 4.48187 4.56936 4.62069 4.79617 4.87240 4.91821 5.01665 5.29157 5.37504 5.44482 5.50192 5.77621 5.90158 6.09222 6.67755 6.78764 6.83803 7.98573 8.49812 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.049885 B = 0.006301 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.156488 B = 4442.793907 C = 4765.434141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.029 3.971 3 Si 1.007 2.993 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.483 4.483 8 H 0.091 0.909 9 C 0.354 3.646 10 N -0.639 5.639 11 C 0.022 3.978 12 C 0.098 3.902 13 H 0.080 0.920 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.142 4.142 19 C 0.104 3.896 20 O -0.505 6.505 21 O -0.376 6.376 22 H 0.282 0.718 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.106 0.894 26 H 0.151 0.849 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -12.745 0.865 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.191 4.191 3 Si 0.825 3.175 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.521 4.521 8 H 0.109 0.891 9 C 0.154 3.846 10 N -0.386 5.386 11 C -0.108 4.108 12 C 0.040 3.960 13 H 0.098 0.902 14 C -0.126 4.126 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.160 4.160 19 C 0.060 3.940 20 O -0.318 6.318 21 O -0.285 6.285 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.124 0.876 26 H 0.168 0.832 27 H 0.185 0.815 28 H 0.177 0.823 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.913 -12.195 1.295 12.605 hybrid contribution 0.740 0.124 -0.536 0.922 sum 3.653 -12.071 0.759 12.635 Atomic orbital electron populations 1.70137 1.09134 1.29552 1.31138 1.26931 0.95765 1.04326 0.92118 0.84867 0.78605 0.74390 0.79636 1.18350 1.19105 1.17640 1.19081 0.94689 0.87379 1.50972 0.89059 1.22408 0.88514 0.84727 0.88961 1.76182 1.09689 1.10384 1.42366 1.23664 0.96320 0.92347 0.98511 1.22367 0.89089 0.87160 0.97366 0.90219 1.20079 1.00738 0.93573 0.98168 1.20997 0.97892 0.99318 0.94315 1.21469 1.00706 0.91706 1.00638 1.21482 0.95526 0.99158 0.95318 1.21664 1.00206 0.97061 0.97080 1.18314 0.94040 0.91640 0.90028 1.84799 1.36887 1.94332 1.15786 1.86882 1.40309 1.17257 1.84048 0.90790 0.91794 0.94693 0.87626 0.83156 0.81499 0.82348 0.73531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.73 11.74 21.87 0.26 -44.48 15 2 C 0.03 1.56 5.50 85.36 0.47 2.03 15 3 Si 1.01 39.58 29.56 68.60 2.03 41.61 15 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 7 C -0.48 -28.02 9.50 23.49 0.22 -27.80 15 8 H 0.09 4.94 7.85 -2.91 -0.02 4.91 15 9 C 0.35 21.29 7.43 85.61 0.64 21.92 15 10 N -0.64 -39.31 9.69 -456.13 -4.42 -43.73 15 11 C 0.02 1.17 7.66 86.78 0.67 1.83 15 12 C 0.10 4.58 3.62 30.46 0.11 4.69 15 13 H 0.08 3.52 7.90 -2.39 -0.02 3.50 15 14 C -0.12 -4.77 5.09 -19.77 -0.10 -4.87 15 15 C -0.11 -3.86 9.40 22.25 0.21 -3.65 15 16 C -0.13 -3.33 10.04 22.28 0.22 -3.11 15 17 C -0.10 -2.06 10.04 22.26 0.22 -1.83 15 18 C -0.14 -3.34 9.99 22.37 0.22 -3.12 15 19 C 0.10 3.23 6.68 22.51 0.15 3.38 15 20 O -0.51 -14.39 12.76 -92.35 -1.18 -15.56 15 21 O -0.38 -20.42 9.67 -84.74 -0.82 -21.24 15 22 H 0.28 14.60 8.29 -92.71 -0.77 13.83 15 23 H 0.06 3.21 8.14 -2.39 -0.02 3.19 15 24 H 0.03 1.84 7.91 -2.39 -0.02 1.82 15 25 H 0.11 4.32 7.25 -2.91 -0.02 4.30 15 26 H 0.15 3.03 8.06 -2.91 -0.02 3.00 15 27 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 28 H 0.16 2.71 8.06 -2.91 -0.02 2.68 15 29 H 0.41 7.52 9.06 -74.06 -0.67 6.85 15 Total: -1.00 -74.11 260.27 -0.59 -74.70 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.51 Total: 19.21 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 3.03 Total: -10.51 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -4.16 Total: -88.21 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.00 Total: -36.80 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -74.11 -0.59 -74.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003871.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.541 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds