Wall clock time and date at job start Mon Mar 30 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48502 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47116 * 300.00025 * 3 2 1 6 6 H 1.48499 * 109.47129 * 60.00124 * 3 2 1 7 7 C 1.37874 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99782 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46967 * 299.99337 * 9 7 2 11 11 O 1.42896 * 109.47703 * 59.99760 * 9 7 2 12 12 C 1.50703 * 109.47078 * 179.97438 * 9 7 2 13 13 C 1.34216 * 126.50215 * 264.97559 * 12 9 7 14 14 N 1.36937 * 109.88452 * 179.97438 * 13 12 9 15 15 H 0.97001 * 125.06300 * 179.97438 * 14 13 12 16 16 C 1.37684 * 109.86419 * 0.22816 * 14 13 12 17 17 C 1.39224 * 133.37465 * 180.44671 * 16 14 13 18 18 C 1.37720 * 120.02887 * 179.61923 * 17 16 14 19 19 C 1.38790 * 120.71620 * 359.74918 * 18 17 16 20 20 C 1.38122 * 120.31746 * 359.97438 * 19 18 17 21 21 O 1.35880 * 120.22369 * 180.02562 * 20 19 18 22 22 C 1.40054 * 119.55465 * 0.02562 * 20 19 18 23 23 H 0.96994 * 120.00378 * 359.97438 * 1 2 3 24 24 H 0.96705 * 113.99556 * 59.99756 * 11 9 7 25 25 H 1.07998 * 125.05626 * 0.02562 * 13 12 9 26 26 H 1.08008 * 119.98772 * 359.34676 * 17 16 14 27 27 H 1.07995 * 119.64192 * 179.77887 * 18 17 16 28 28 H 1.08003 * 119.83983 * 180.02562 * 19 18 17 29 29 H 0.96703 * 114.00149 * 270.02236 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6241 -2.5575 0.8881 11 8 0.4299 -2.5741 -1.1687 12 6 2.2304 -3.6446 -0.0027 13 6 2.6774 -4.3118 -1.0780 14 7 3.5566 -5.2869 -0.6889 15 1 4.0109 -5.8992 -1.2885 16 6 3.6952 -5.2722 0.6809 17 6 4.4514 -6.0270 1.5736 18 6 4.3849 -5.7672 2.9244 19 6 3.5727 -4.7530 3.4122 20 6 2.8175 -3.9870 2.5458 21 8 2.0234 -2.9941 3.0253 22 6 2.8758 -4.2405 1.1696 23 1 -0.4850 0.8400 0.0004 24 1 0.9224 -2.5282 -1.9997 25 1 2.3875 -4.1093 -2.0985 26 1 5.0872 -6.8194 1.2069 27 1 4.9715 -6.3589 3.6116 28 1 3.5317 -4.5613 4.4743 29 1 1.1249 -3.2789 3.2416 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010341.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:32 Heat of formation + Delta-G solvation = -61.380728 kcal Electronic energy + Delta-G solvation = -16058.767340 eV Core-core repulsion = 13332.411666 eV Total energy + Delta-G solvation = -2726.355674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11367 -38.98097 -37.68130 -36.44391 -34.21708 -32.35797 -30.14759 -29.68135 -28.13789 -24.69780 -23.60650 -22.74537 -20.55228 -19.43824 -18.97701 -17.84679 -16.98381 -16.65425 -16.38272 -16.14646 -15.51474 -15.38726 -14.86001 -14.73224 -14.50341 -13.41932 -13.22416 -13.04604 -12.91486 -12.81727 -12.35515 -12.17988 -12.07687 -11.41510 -11.21135 -10.73665 -10.39733 -10.07096 -9.11065 -8.38532 -8.01119 -6.30023 0.19920 0.70725 1.37395 1.39392 1.51150 1.89575 2.34373 2.44395 2.88962 3.16347 3.49325 3.98611 4.16555 4.27367 4.37432 4.42193 4.54987 4.80675 4.97947 5.06075 5.10708 5.53873 5.62969 5.68388 5.69982 5.82643 6.02634 6.16559 6.23472 6.76860 6.87400 7.00012 7.37806 7.58754 8.95919 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.008922 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.930727 B = 3137.642288 C = 3557.266611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.038 0.962 9 C 0.301 3.699 10 H 0.026 0.974 11 O -0.577 6.577 12 C -0.188 4.188 13 C 0.037 3.963 14 N -0.582 5.582 15 H 0.432 0.568 16 C 0.099 3.901 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.188 4.188 20 C 0.129 3.871 21 O -0.507 6.507 22 C -0.166 4.166 23 H 0.261 0.739 24 H 0.357 0.643 25 H 0.190 0.810 26 H 0.156 0.844 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -13.001 1.633 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.056 0.944 9 C 0.243 3.757 10 H 0.044 0.956 11 O -0.381 6.381 12 C -0.195 4.195 13 C -0.088 4.088 14 N -0.187 5.187 15 H 0.272 0.728 16 C -0.010 4.010 17 C -0.164 4.164 18 C -0.101 4.101 19 C -0.208 4.208 20 C 0.084 3.916 21 O -0.318 6.318 22 C -0.172 4.172 23 H 0.070 0.930 24 H 0.202 0.798 25 H 0.207 0.793 26 H 0.173 0.827 27 H 0.184 0.816 28 H 0.159 0.841 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.540 -12.662 1.879 15.388 hybrid contribution 0.180 0.866 -0.510 1.021 sum 8.720 -11.796 1.369 14.734 Atomic orbital electron populations 1.70189 1.07222 1.27052 1.49300 1.25765 0.95470 1.02258 0.93730 0.85617 0.78794 0.79880 0.77898 1.19853 1.19788 1.20541 1.21711 0.92351 0.92205 1.52710 0.94369 1.17362 0.85775 0.88051 0.84466 0.95579 1.86532 1.38958 1.96454 1.16138 1.21631 1.04396 1.01135 0.92303 1.21668 0.95326 0.92219 0.99553 1.41552 1.40448 1.31940 1.04776 0.72831 1.18452 0.99748 0.98176 0.84644 1.20381 1.01930 1.01983 0.92065 1.21033 0.97765 0.96599 0.94746 1.21350 1.01606 0.97882 0.99973 1.18418 0.94910 0.88728 0.89522 1.84830 1.26898 1.34880 1.85199 1.19805 1.03590 0.99893 0.93866 0.93035 0.79814 0.79296 0.82670 0.81598 0.84095 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.17 12.84 21.45 0.28 -54.89 15 2 C 0.03 1.72 5.40 84.65 0.46 2.18 15 3 Si 0.95 45.96 29.54 68.60 2.03 47.99 15 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 15 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 7 C -0.55 -32.41 8.75 25.60 0.22 -32.19 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 15 9 C 0.30 16.41 3.13 29.10 0.09 16.50 15 10 H 0.03 1.61 7.63 -2.38 -0.02 1.59 15 11 O -0.58 -30.52 12.52 -148.98 -1.87 -32.39 15 12 C -0.19 -8.56 5.39 -18.63 -0.10 -8.66 15 13 C 0.04 1.32 11.16 82.98 0.93 2.25 15 14 N -0.58 -16.71 6.07 -187.59 -1.14 -17.85 15 15 H 0.43 8.24 8.96 -92.71 -0.83 7.41 15 16 C 0.10 3.25 7.27 39.02 0.28 3.54 15 17 C -0.14 -3.61 10.06 22.38 0.23 -3.39 15 18 C -0.08 -2.00 10.01 22.28 0.22 -1.78 15 19 C -0.19 -5.77 9.97 22.37 0.22 -5.55 15 20 C 0.13 5.16 6.74 22.68 0.15 5.31 15 21 O -0.51 -21.73 12.78 -92.20 -1.18 -22.90 15 22 C -0.17 -6.98 6.30 -20.13 -0.13 -7.11 15 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 15 24 H 0.36 16.08 8.09 -74.05 -0.60 15.48 15 25 H 0.19 5.54 7.39 -2.91 -0.02 5.52 15 26 H 0.16 2.63 8.06 -2.91 -0.02 2.61 15 27 H 0.17 2.57 8.06 -2.91 -0.02 2.54 15 28 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 29 H 0.39 13.76 9.06 -74.06 -0.67 13.09 15 Total: -1.00 -77.06 260.59 -0.19 -77.24 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.88 Total: 31.70 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 2.58 Total: -28.90 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.86 Total: -72.75 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -3.04 Total: -55.29 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -77.06 -0.19 -77.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010341.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.864 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds