Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48500 * 109.46965 * 240.00511 * 3 2 1 5 5 H 1.48496 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47040 * 120.00671 * 3 2 1 7 7 C 1.37884 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99914 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47395 * 60.00202 * 9 7 2 11 11 O 1.42907 * 109.47209 * 300.00214 * 9 7 2 12 12 C 1.50697 * 109.46988 * 180.02562 * 9 7 2 13 13 C 1.34239 * 125.03415 * 84.98531 * 12 9 7 14 14 C 1.46494 * 107.02524 * 180.02562 * 13 12 9 15 15 C 1.39668 * 133.94750 * 179.97438 * 14 13 12 16 16 C 1.38044 * 119.60645 * 179.34511 * 15 14 13 17 17 O 1.35991 * 119.87125 * 180.20354 * 16 15 14 18 18 C 1.39264 * 120.26920 * 0.56118 * 16 15 14 19 19 C 1.37691 * 120.61845 * 359.63824 * 18 16 15 20 20 C 1.39099 * 119.99291 * 0.02562 * 19 18 16 21 21 N 1.36805 * 125.02947 * 265.02433 * 12 9 7 22 22 H 0.97001 * 125.07206 * 359.92261 * 21 12 9 23 23 H 0.96996 * 120.00092 * 359.97438 * 1 2 3 24 24 H 0.96698 * 113.99445 * 300.00170 * 11 9 7 25 25 H 1.08001 * 126.49300 * 0.05299 * 13 12 9 26 26 H 1.07999 * 120.19801 * 359.97438 * 15 14 13 27 27 H 0.96700 * 114.00195 * 270.36141 * 17 16 15 28 28 H 1.07994 * 119.69429 * 179.61892 * 18 16 15 29 29 H 1.07996 * 120.00554 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5568 -0.8903 11 8 0.4300 -2.5751 1.1666 12 6 2.2305 -3.6445 -0.0005 13 6 2.8043 -4.1678 1.0944 14 6 3.6800 -5.2520 0.6432 15 6 4.5253 -6.1511 1.2973 16 6 5.2240 -7.0880 0.5627 17 8 6.0453 -7.9688 1.1944 18 6 5.0970 -7.1302 -0.8235 19 6 4.2699 -6.2459 -1.4792 20 6 3.5519 -5.2989 -0.7564 21 7 2.6669 -4.3045 -1.1165 22 1 2.3914 -4.1057 -2.0251 23 1 -0.4850 0.8400 0.0004 24 1 0.9224 -2.5299 1.9975 25 1 2.6493 -3.8500 2.1149 26 1 4.6238 -6.1203 2.3723 27 1 6.9538 -7.6543 1.2984 28 1 5.6527 -7.8630 -1.3896 29 1 4.1785 -6.2877 -2.5545 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019076.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -42.136244 kcal Electronic energy + Delta-G solvation = -15492.013962 eV Core-core repulsion = 12766.492791 eV Total energy + Delta-G solvation = -2725.521171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81272 -38.27451 -35.96873 -34.61497 -32.33097 -31.46087 -28.99572 -28.18985 -26.54859 -23.49167 -21.78901 -21.23158 -19.56505 -17.88144 -17.45977 -17.11499 -15.73513 -15.12777 -14.73966 -14.48427 -13.94491 -13.83795 -13.66449 -13.01321 -12.70719 -12.44944 -12.10801 -11.44346 -11.37821 -11.21004 -10.99917 -10.77241 -10.29859 -10.16761 -9.51993 -9.31424 -8.79147 -8.56532 -7.60025 -7.18448 -6.17640 -4.38738 1.42104 1.79054 3.21017 3.25468 3.26983 3.37876 3.61419 4.04379 4.28642 4.48825 5.02800 5.09633 5.24591 5.54961 5.62996 5.72883 6.05198 6.09200 6.18462 6.27082 6.43754 6.63131 6.77833 6.86491 7.08721 7.39544 7.64236 7.74598 7.87119 7.90044 8.07732 8.63977 9.13751 9.37686 10.85281 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043281 B = 0.005865 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.775404 B = 4773.074910 C = 4844.001119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.569 4.569 8 H 0.061 0.939 9 C 0.281 3.719 10 H 0.068 0.932 11 O -0.551 6.551 12 C 0.116 3.884 13 C -0.232 4.232 14 C -0.082 4.082 15 C -0.103 4.103 16 C 0.063 3.937 17 O -0.501 6.501 18 C -0.138 4.138 19 C -0.113 4.113 20 C 0.080 3.920 21 N -0.587 5.587 22 H 0.413 0.587 23 H 0.265 0.735 24 H 0.353 0.647 25 H 0.142 0.858 26 H 0.123 0.877 27 H 0.380 0.620 28 H 0.124 0.876 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -9.170 -1.077 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.607 4.607 8 H 0.079 0.921 9 C 0.222 3.778 10 H 0.085 0.915 11 O -0.353 6.353 12 C 0.006 3.994 13 C -0.255 4.255 14 C -0.087 4.087 15 C -0.122 4.122 16 C 0.018 3.982 17 O -0.310 6.310 18 C -0.158 4.158 19 C -0.133 4.133 20 C -0.027 4.027 21 N -0.191 5.191 22 H 0.250 0.750 23 H 0.075 0.925 24 H 0.198 0.802 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.234 0.766 28 H 0.142 0.858 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.374 -9.398 -1.600 12.052 hybrid contribution 1.332 1.318 -0.109 1.877 sum 8.706 -8.080 -1.709 12.000 Atomic orbital electron populations 1.70051 1.05979 1.27121 1.46007 1.25048 0.94787 0.99331 0.93448 0.86588 0.79616 0.82446 0.78925 1.20087 1.21034 1.19869 1.21433 0.93338 0.90058 1.55828 0.92109 1.18137 0.86012 0.86328 0.87322 0.91483 1.86618 1.37285 1.96037 1.15361 1.22446 0.97321 0.94679 0.84926 1.21208 1.04660 1.01232 0.98409 1.19114 0.99556 0.97987 0.92047 1.20671 0.97882 0.93977 0.99646 1.18015 0.97347 0.92796 0.90071 1.84866 1.23782 1.42840 1.79509 1.20830 1.01400 1.00044 0.93484 1.19800 0.98944 0.95820 0.98785 1.18323 0.96499 0.93535 0.94333 1.41891 1.39077 1.28901 1.09233 0.74997 0.92530 0.80198 0.84050 0.85878 0.76649 0.85834 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 12.84 55.43 0.71 -23.34 15 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 15 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.57 -14.88 8.75 -34.44 -0.30 -15.18 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.28 6.80 3.35 -29.04 -0.10 6.71 15 10 H 0.07 1.73 8.14 -51.93 -0.42 1.30 15 11 O -0.55 -13.62 12.59 -35.23 -0.44 -14.06 15 12 C 0.12 2.43 6.10 -81.78 -0.50 1.93 15 13 C -0.23 -4.62 10.37 -37.67 -0.39 -5.01 15 14 C -0.08 -1.52 6.37 -105.14 -0.67 -2.19 15 15 C -0.10 -1.68 10.03 -39.12 -0.39 -2.07 15 16 C 0.06 0.94 6.69 -39.27 -0.26 0.67 15 17 O -0.50 -6.40 13.50 -19.71 -0.27 -6.67 15 18 C -0.14 -1.93 9.95 -39.40 -0.39 -2.32 15 19 C -0.11 -1.67 10.06 -39.46 -0.40 -2.06 15 20 C 0.08 1.42 7.27 -83.92 -0.61 0.81 15 21 N -0.59 -10.76 6.08 -6.93 -0.04 -10.80 15 22 H 0.41 6.51 8.96 -40.82 -0.37 6.14 15 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.35 7.68 8.08 45.56 0.37 8.04 15 25 H 0.14 2.61 7.48 -52.49 -0.39 2.22 15 26 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 27 H 0.38 2.96 9.06 45.56 0.41 3.37 15 28 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 29 H 0.12 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -30.94 262.15 -6.43 -37.37 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -1.21 Total: 14.80 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -4.11 Total: -16.64 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.67 Total: -34.14 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.71 Total: -20.73 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.94 -6.43 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019076.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.764 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds