Wall clock time and date at job start Mon Mar 30 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48500 * 109.46965 * 240.00511 * 3 2 1 5 5 H 1.48496 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47040 * 120.00671 * 3 2 1 7 7 C 1.37884 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99914 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47395 * 60.00202 * 9 7 2 11 11 O 1.42907 * 109.47209 * 300.00214 * 9 7 2 12 12 C 1.50697 * 109.46988 * 180.02562 * 9 7 2 13 13 C 1.34239 * 125.03415 * 84.98531 * 12 9 7 14 14 C 1.46494 * 107.02524 * 180.02562 * 13 12 9 15 15 C 1.39668 * 133.94750 * 179.97438 * 14 13 12 16 16 C 1.38044 * 119.60645 * 179.34511 * 15 14 13 17 17 O 1.35991 * 119.87125 * 180.20354 * 16 15 14 18 18 C 1.39264 * 120.26920 * 0.56118 * 16 15 14 19 19 C 1.37691 * 120.61845 * 359.63824 * 18 16 15 20 20 C 1.39099 * 119.99291 * 0.02562 * 19 18 16 21 21 N 1.36805 * 125.02947 * 265.02433 * 12 9 7 22 22 H 0.97001 * 125.07206 * 359.92261 * 21 12 9 23 23 H 0.96996 * 120.00092 * 359.97438 * 1 2 3 24 24 H 0.96698 * 113.99445 * 300.00170 * 11 9 7 25 25 H 1.08001 * 126.49300 * 0.05299 * 13 12 9 26 26 H 1.07999 * 120.19801 * 359.97438 * 15 14 13 27 27 H 0.96700 * 114.00195 * 270.36141 * 17 16 15 28 28 H 1.07994 * 119.69429 * 179.61892 * 18 16 15 29 29 H 1.07996 * 120.00554 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5568 -0.8903 11 8 0.4300 -2.5751 1.1666 12 6 2.2305 -3.6445 -0.0005 13 6 2.8043 -4.1678 1.0944 14 6 3.6800 -5.2520 0.6432 15 6 4.5253 -6.1511 1.2973 16 6 5.2240 -7.0880 0.5627 17 8 6.0453 -7.9688 1.1944 18 6 5.0970 -7.1302 -0.8235 19 6 4.2699 -6.2459 -1.4792 20 6 3.5519 -5.2989 -0.7564 21 7 2.6669 -4.3045 -1.1165 22 1 2.3914 -4.1057 -2.0251 23 1 -0.4850 0.8400 0.0004 24 1 0.9224 -2.5299 1.9975 25 1 2.6493 -3.8500 2.1149 26 1 4.6238 -6.1203 2.3723 27 1 6.9538 -7.6543 1.2984 28 1 5.6527 -7.8630 -1.3896 29 1 4.1785 -6.2877 -2.5545 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019076.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:40 Heat of formation + Delta-G solvation = -66.129696 kcal Electronic energy + Delta-G solvation = -15493.054396 eV Core-core repulsion = 12766.492791 eV Total energy + Delta-G solvation = -2726.561605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17337 -39.44990 -37.67991 -35.94066 -34.36452 -32.77386 -30.62312 -29.48622 -28.24644 -25.23654 -23.11216 -22.52503 -21.08570 -19.24665 -18.94151 -18.77350 -17.19188 -16.73286 -16.28321 -15.89105 -15.52675 -15.27042 -14.99784 -14.66448 -14.22524 -13.82078 -13.52233 -13.32121 -13.01199 -12.80885 -12.57284 -12.22516 -12.01674 -11.45296 -11.24867 -10.81571 -10.64021 -10.49925 -8.92835 -8.58353 -8.18327 -6.48128 0.16871 0.58156 1.40829 1.41949 1.50552 1.84548 2.22973 2.39574 2.83655 3.06306 3.39349 3.83122 4.02362 4.18493 4.23637 4.41107 4.52856 4.70520 4.77591 5.05308 5.11655 5.19077 5.40989 5.56481 5.59376 5.79837 5.90298 5.96460 6.21224 6.60605 6.70567 6.99283 7.22679 7.38442 8.82905 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043281 B = 0.005865 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.775404 B = 4773.074910 C = 4844.001119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.033 3.967 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.577 4.577 8 H 0.056 0.944 9 C 0.286 3.714 10 H 0.041 0.959 11 O -0.567 6.567 12 C 0.090 3.910 13 C -0.236 4.236 14 C -0.109 4.109 15 C -0.116 4.116 16 C 0.072 3.928 17 O -0.505 6.505 18 C -0.128 4.128 19 C -0.111 4.111 20 C 0.067 3.933 21 N -0.586 5.586 22 H 0.421 0.579 23 H 0.266 0.734 24 H 0.363 0.637 25 H 0.145 0.855 26 H 0.132 0.868 27 H 0.405 0.595 28 H 0.158 0.842 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 -10.342 -1.536 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.615 4.615 8 H 0.074 0.926 9 C 0.227 3.773 10 H 0.059 0.941 11 O -0.370 6.370 12 C -0.020 4.020 13 C -0.260 4.260 14 C -0.114 4.114 15 C -0.135 4.135 16 C 0.027 3.973 17 O -0.317 6.317 18 C -0.147 4.147 19 C -0.132 4.132 20 C -0.040 4.040 21 N -0.190 5.190 22 H 0.259 0.741 23 H 0.075 0.925 24 H 0.209 0.791 25 H 0.162 0.838 26 H 0.150 0.850 27 H 0.263 0.737 28 H 0.175 0.825 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.600 -10.582 -2.064 14.436 hybrid contribution 0.768 1.491 0.063 1.679 sum 10.369 -9.091 -2.001 13.934 Atomic orbital electron populations 1.70170 1.07504 1.27961 1.47353 1.25852 0.95514 1.02729 0.92984 0.85553 0.78341 0.78254 0.79103 1.19433 1.20635 1.19342 1.21681 0.93174 0.91294 1.55334 0.92618 1.17797 0.85970 0.87355 0.86181 0.94089 1.86547 1.38175 1.96208 1.16104 1.21832 0.98402 0.95261 0.86498 1.21398 1.04654 1.01620 0.98321 1.19255 1.00649 0.98628 0.92873 1.20848 0.97996 0.94263 1.00417 1.18120 0.96861 0.91802 0.90516 1.84804 1.25339 1.42337 1.79247 1.21245 1.00381 0.99742 0.93335 1.20184 0.97943 0.94719 1.00332 1.18690 0.96810 0.93980 0.94506 1.41771 1.39299 1.29004 1.08964 0.74095 0.92498 0.79056 0.83751 0.84983 0.73713 0.82473 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.25 12.84 21.45 0.28 -50.97 15 2 C 0.03 1.77 5.40 84.66 0.46 2.23 15 3 Si 0.96 42.08 29.54 68.60 2.03 44.11 15 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 7 C -0.58 -30.85 8.75 25.60 0.22 -30.63 15 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 15 9 C 0.29 14.37 3.35 29.10 0.10 14.47 15 10 H 0.04 2.23 8.14 -2.39 -0.02 2.22 15 11 O -0.57 -29.04 12.59 -148.98 -1.88 -30.92 15 12 C 0.09 3.87 6.10 40.87 0.25 4.12 15 13 C -0.24 -9.56 10.37 23.51 0.24 -9.32 15 14 C -0.11 -3.98 6.37 -20.20 -0.13 -4.11 15 15 C -0.12 -3.59 10.03 22.57 0.23 -3.36 15 16 C 0.07 1.91 6.69 22.47 0.15 2.06 15 17 O -0.51 -10.93 13.50 -93.45 -1.26 -12.19 15 18 C -0.13 -3.05 9.95 22.39 0.22 -2.83 15 19 C -0.11 -2.94 10.06 22.35 0.22 -2.72 15 20 C 0.07 2.29 7.27 38.98 0.28 2.57 15 21 N -0.59 -21.55 6.08 -175.83 -1.07 -22.62 15 22 H 0.42 13.40 8.96 -92.71 -0.83 12.57 15 23 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 24 H 0.36 16.41 8.08 -74.06 -0.60 15.81 15 25 H 0.14 5.49 7.48 -2.91 -0.02 5.47 15 26 H 0.13 3.69 8.06 -2.91 -0.02 3.67 15 27 H 0.41 4.62 9.06 -74.06 -0.67 3.94 15 28 H 0.16 2.72 8.06 -2.91 -0.02 2.70 15 29 H 0.15 3.00 8.06 -2.91 -0.02 2.98 15 Total: -1.00 -66.34 262.15 -0.54 -66.88 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.88 Total: 33.22 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.25 Total: -27.50 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.79 Total: -73.60 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -3.14 Total: -43.11 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -66.34 -0.54 -66.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019076.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.752 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds