Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 O 1.41341 * 125.60705 * 2 1 4 4 C 1.34787 * 109.85963 * 179.97438 * 3 2 1 5 5 C 1.39173 * 132.55645 * 180.02562 * 4 3 2 6 6 C 1.37747 * 120.00801 * 179.97438 * 5 4 3 7 7 C 1.38763 * 120.61390 * 0.03473 * 6 5 4 8 8 C 1.50702 * 119.85386 * 180.25785 * 7 6 5 9 9 C 1.50701 * 109.46910 * 269.72255 * 8 7 6 10 10 H 1.07997 * 120.00306 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99740 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00158 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00016 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47087 * 89.99734 * 13 11 9 15 15 H 1.48501 * 109.47216 * 209.99468 * 13 11 9 16 16 H 1.48501 * 109.47249 * 329.99846 * 13 11 9 17 17 C 1.37675 * 120.29227 * 359.97438 * 7 6 5 18 18 C 1.39592 * 119.72277 * 0.02562 * 17 7 6 19 19 C 1.35158 * 125.60929 * 179.97438 * 2 1 3 20 20 O 1.21816 * 126.72040 * 0.04145 * 19 2 1 21 21 H 1.08994 * 109.47159 * 0.02613 * 1 2 3 22 22 H 1.09000 * 109.46903 * 120.02977 * 1 2 3 23 23 H 1.09009 * 109.46813 * 240.02435 * 1 2 3 24 24 H 1.08001 * 119.99190 * 359.96958 * 5 4 3 25 25 H 1.08003 * 119.69500 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.46587 * 29.72675 * 8 7 6 27 27 H 1.09000 * 109.46810 * 149.72177 * 8 7 6 28 28 H 0.97003 * 120.00192 * 180.02562 * 12 11 9 29 29 H 1.08006 * 120.13447 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.2880 1.1491 0.0000 4 6 3.5853 0.7833 0.0006 5 6 4.7694 1.5146 0.0013 6 6 5.9823 0.8616 0.0023 7 6 6.0384 -0.5249 0.0019 8 6 7.3747 -1.2216 0.0089 9 6 7.8247 -1.4592 -1.4096 10 1 7.2053 -1.1375 -2.2337 11 6 9.0278 -2.0863 -1.6552 12 7 9.4208 -2.2933 -2.8930 13 14 10.0995 -2.6421 -0.2298 14 1 9.7366 -4.0311 0.1502 15 1 11.5270 -2.5973 -0.6368 16 1 9.8870 -1.7400 0.9305 17 6 4.8787 -1.2668 0.0010 18 6 3.6424 -0.6187 0.0000 19 6 2.2520 -1.0988 0.0005 20 8 1.8823 -2.2595 0.0003 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5143 -0.8897 23 1 -0.3633 -0.5135 0.8903 24 1 4.7373 2.5941 0.0009 25 1 6.8981 1.4341 0.0032 26 1 8.1065 -0.5984 0.5228 27 1 7.2837 -2.1767 0.5261 28 1 10.2670 -2.7348 -3.0659 29 1 4.9254 -2.3459 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = 27.212200 kcal Electronic energy + Delta-G solvation = -15489.234781 eV Core-core repulsion = 12766.720784 eV Total energy + Delta-G solvation = -2722.513997 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.61122 -38.11730 -37.60671 -33.77321 -33.01139 -31.23260 -31.06477 -27.88503 -27.07393 -23.33398 -22.81289 -20.91880 -20.84539 -17.47876 -17.24892 -16.85373 -16.58206 -16.00522 -14.90496 -14.31610 -14.29320 -13.94486 -13.69672 -13.46177 -13.36478 -12.88949 -12.56892 -12.16429 -11.76794 -11.61432 -11.20710 -10.57907 -10.24271 -10.09954 -9.86913 -9.48085 -9.26441 -8.78263 -8.63640 -7.79027 -6.12644 -4.13228 1.01655 1.28366 1.65609 2.80025 3.26022 3.34089 3.35005 3.55025 4.04705 4.36648 4.59927 4.83732 4.90864 5.06532 5.19424 5.28487 5.40483 5.57919 5.72971 5.82865 6.02074 6.14102 6.38819 6.62597 6.69228 6.84411 6.97075 7.28682 7.33010 7.61058 7.89046 8.41927 8.91820 9.46684 11.00075 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043546 B = 0.006033 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.838811 B = 4639.967769 C = 4913.057341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.484 5.484 3 O -0.067 6.067 4 C 0.079 3.921 5 C -0.131 4.131 6 C -0.048 4.048 7 C -0.061 4.061 8 C 0.017 3.983 9 C -0.519 4.519 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.014 4.014 18 C -0.234 4.234 19 C 0.555 3.445 20 O -0.506 6.506 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.142 0.858 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 7.739 7.591 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.266 5.266 3 O -0.062 6.062 4 C 0.031 3.969 5 C -0.151 4.151 6 C -0.067 4.067 7 C -0.061 4.061 8 C -0.020 4.020 9 C -0.557 4.557 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.033 4.033 18 C -0.239 4.239 19 C 0.347 3.653 20 O -0.384 6.384 21 H 0.111 0.889 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.151 0.849 25 H 0.160 0.840 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.259 7.288 7.474 16.876 hybrid contribution 0.618 -0.186 0.468 0.798 sum -12.641 7.102 7.943 16.533 Atomic orbital electron populations 1.21824 0.71875 1.04214 1.03431 1.50380 1.03379 0.96835 1.76003 1.88642 1.13502 1.14564 1.89516 1.19687 0.83931 0.93789 0.99480 1.19924 0.87468 0.99588 1.08110 1.21131 0.96506 0.94492 0.94531 1.20264 0.96541 0.93224 0.96111 1.18804 0.88828 0.95426 0.98907 1.20927 1.05171 1.39269 0.90340 0.90718 1.24996 0.97433 0.95142 0.95560 1.69893 1.22149 1.42500 1.18961 0.86809 0.79868 0.79731 0.83124 1.20070 1.21213 1.18850 1.20618 0.88562 1.00725 0.93395 1.20429 0.94638 0.93456 1.15368 1.18296 0.86347 0.84018 0.76590 1.90903 1.80223 1.15803 1.51423 0.88882 0.90126 0.90173 0.84905 0.84034 0.94900 0.95422 0.92486 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.13 11.40 59.85 0.68 1.81 15 2 N -0.48 -7.06 4.21 -68.15 -0.29 -7.35 15 3 O -0.07 -1.02 11.94 7.78 0.09 -0.93 15 4 C 0.08 1.29 7.43 -38.45 -0.29 1.01 15 5 C -0.13 -1.95 10.06 -39.41 -0.40 -2.35 15 6 C -0.05 -0.80 9.66 -39.57 -0.38 -1.19 15 7 C -0.06 -1.20 5.07 -104.63 -0.53 -1.73 15 8 C 0.02 0.39 4.16 -29.03 -0.12 0.27 15 9 C -0.52 -14.17 9.65 -34.44 -0.33 -14.51 15 10 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 12 N -0.90 -26.94 13.96 55.43 0.77 -26.16 15 13 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 15 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 16 H -0.26 -5.86 6.54 56.52 0.37 -5.49 15 17 C -0.01 -0.27 9.74 -39.28 -0.38 -0.65 15 18 C -0.23 -4.30 6.33 -105.02 -0.67 -4.97 15 19 C 0.56 9.97 8.23 -12.50 -0.10 9.86 15 20 O -0.51 -10.19 17.93 5.09 0.09 -10.10 15 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.08 0.63 8.14 -51.92 -0.42 0.21 15 24 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.14 2.09 8.06 -52.48 -0.42 1.67 15 26 H 0.03 0.71 7.14 -51.93 -0.37 0.34 15 27 H 0.03 0.61 7.51 -51.93 -0.39 0.22 15 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 29 H 0.14 2.61 8.06 -52.48 -0.42 2.19 15 LS Contribution 263.00 15.07 3.96 3.96 Total: -1.00 -32.34 263.00 -5.53 -37.87 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -2.88 Total: -2.78 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.61 Total: -10.55 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.49 Total: -33.51 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.18 Total: -11.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.34 -5.53 -37.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.084 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds