Wall clock time and date at job start Mon Mar 30 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00551 * 2 1 4 4 H 1.48500 * 109.47373 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46666 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47192 * 59.99595 * 3 2 1 7 7 C 1.37885 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99958 * 359.97438 * 7 2 1 10 10 H 1.08999 * 112.74166 * 49.24439 * 9 7 2 11 11 C 1.52358 * 113.47182 * 278.41029 * 9 7 2 12 12 C 1.49987 * 84.87781 * 245.22834 * 11 9 7 13 13 O 1.21285 * 133.24377 * 180.25752 * 12 11 9 14 14 N 1.33844 * 93.51187 * 359.97438 * 12 11 9 15 15 C 1.40109 * 133.17421 * 179.97438 * 14 12 11 16 16 C 1.38847 * 120.01364 * 179.73128 * 15 14 12 17 17 C 1.38091 * 119.98252 * 179.71924 * 16 15 14 18 18 C 1.38721 * 120.01537 * 0.54990 * 17 16 15 19 19 O 1.35965 * 119.98780 * 179.69696 * 18 17 16 20 20 C 1.38727 * 120.03102 * 359.72626 * 18 17 16 21 21 C 1.38092 * 120.01172 * 359.97438 * 20 18 17 22 22 H 0.97001 * 119.99380 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.96756 * 131.24672 * 11 9 7 24 24 H 1.09001 * 113.96896 * 359.21055 * 11 9 7 25 25 H 1.08000 * 120.00647 * 359.97165 * 16 15 14 26 26 H 1.08000 * 119.99241 * 180.27420 * 17 16 15 27 27 H 0.96698 * 114.00805 * 270.02820 * 19 18 17 28 28 H 1.07999 * 119.99095 * 179.97438 * 20 18 17 29 29 H 1.08000 * 120.00717 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 1 0.4715 -2.5364 -0.7594 11 6 0.7709 -2.9216 1.3847 12 6 1.7195 -4.0709 1.2153 13 8 2.0128 -5.0164 1.9160 14 7 2.1177 -3.6705 0.0018 15 6 3.0321 -4.1867 -0.9258 16 6 3.2355 -3.5368 -2.1358 17 6 4.1411 -4.0429 -3.0473 18 6 4.8391 -5.2065 -2.7590 19 8 5.7261 -5.7077 -3.6594 20 6 4.6321 -5.8595 -1.5526 21 6 3.7313 -5.3511 -0.6377 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2784 -3.2149 1.4188 24 1 1.0499 -2.2308 2.1803 25 1 2.6886 -2.6335 -2.3624 26 1 4.3028 -3.5351 -3.9866 27 1 5.3380 -6.3305 -4.2891 28 1 5.1755 -6.7657 -1.3290 29 1 3.5705 -5.8593 0.3016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:48 Heat of formation + Delta-G solvation = -44.714936 kcal Electronic energy + Delta-G solvation = -15725.719475 eV Core-core repulsion = 13000.086483 eV Total energy + Delta-G solvation = -2725.632991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24952 -40.30685 -37.98072 -37.31523 -34.65672 -32.19393 -31.97400 -28.70018 -27.65265 -24.54436 -23.43856 -23.21349 -20.11838 -19.30608 -19.01758 -18.21870 -17.72775 -16.81082 -16.34964 -16.22679 -15.94559 -15.38031 -14.41311 -14.37701 -14.25495 -13.99079 -13.68318 -13.28959 -13.04158 -12.87269 -12.64764 -12.50925 -12.08287 -11.75795 -11.40146 -11.01892 -10.83763 -10.62724 -10.03201 -8.74740 -8.24308 -6.41219 0.13215 0.33151 1.42229 1.47012 1.55020 1.58688 2.10475 2.41040 2.76513 3.04681 3.21141 3.35617 3.92281 3.98871 4.25841 4.36035 4.45048 4.54447 4.66078 4.95621 4.97710 5.13130 5.18942 5.24124 5.43267 5.57898 5.66444 5.90373 5.94568 6.02847 6.64716 6.92821 7.21997 7.34593 8.80659 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.008434 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.602508 B = 3319.167507 C = 4195.302841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.039 3.961 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.263 3.737 10 H 0.056 0.944 11 C -0.154 4.154 12 C 0.515 3.485 13 O -0.555 6.555 14 N -0.566 5.566 15 C 0.150 3.850 16 C -0.137 4.137 17 C -0.112 4.112 18 C 0.073 3.927 19 O -0.502 6.502 20 C -0.112 4.112 21 C -0.160 4.160 22 H 0.272 0.728 23 H 0.118 0.882 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.153 0.847 27 H 0.408 0.592 28 H 0.152 0.848 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -6.287 -6.281 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.164 4.164 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.163 3.837 10 H 0.074 0.926 11 C -0.195 4.195 12 C 0.305 3.695 13 O -0.434 6.434 14 N -0.289 5.289 15 C 0.056 3.944 16 C -0.158 4.158 17 C -0.130 4.130 18 C 0.028 3.972 19 O -0.314 6.314 20 C -0.131 4.131 21 C -0.181 4.181 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.146 0.854 26 H 0.171 0.829 27 H 0.266 0.734 28 H 0.170 0.830 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.946 -6.350 -5.710 9.869 hybrid contribution -0.108 0.642 -0.083 0.656 sum 4.838 -5.709 -5.792 9.463 Atomic orbital electron populations 1.69989 1.06902 1.28511 1.48514 1.25509 0.95563 1.01841 0.93460 0.85506 0.78694 0.79401 0.78069 1.19996 1.20039 1.20200 1.21126 0.93002 0.90165 1.53700 0.92811 1.19730 0.87234 0.82970 0.93786 0.92624 1.23379 0.99828 0.94484 1.01769 1.22306 0.81783 0.85320 0.80081 1.90581 1.65134 1.33620 1.54089 1.48425 1.37758 1.26774 1.15925 1.18283 0.91634 0.94047 0.90407 1.20830 1.01132 1.01108 0.92703 1.21428 0.94669 0.96600 1.00343 1.18302 0.93308 0.94675 0.90935 1.84799 1.35420 1.64870 1.46337 1.21350 0.97281 1.00882 0.93539 1.20838 0.99503 0.96424 1.01318 0.91887 0.86387 0.87182 0.85395 0.82916 0.73366 0.83026 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.78 13.28 21.45 0.28 -45.50 15 2 C 0.04 1.94 5.46 84.66 0.46 2.40 15 3 Si 0.96 39.79 29.54 68.60 2.03 41.82 15 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.54 -26.96 8.75 25.60 0.22 -26.74 15 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 15 9 C 0.26 12.11 3.46 40.84 0.14 12.25 15 10 H 0.06 2.68 8.13 -2.39 -0.02 2.66 15 11 C -0.15 -6.49 7.93 29.42 0.23 -6.25 15 12 C 0.51 22.97 9.00 84.24 0.76 23.73 15 13 O -0.55 -26.44 16.83 -3.04 -0.05 -26.49 15 14 N -0.57 -24.89 3.20 -662.41 -2.12 -27.01 15 15 C 0.15 6.04 6.74 38.11 0.26 6.30 15 16 C -0.14 -4.99 9.68 22.38 0.22 -4.77 15 17 C -0.11 -3.29 9.98 22.35 0.22 -3.06 15 18 C 0.07 2.02 6.70 22.50 0.15 2.17 15 19 O -0.50 -11.02 13.50 -93.15 -1.26 -12.28 15 20 C -0.11 -3.28 9.98 22.35 0.22 -3.05 15 21 C -0.16 -5.82 9.62 22.38 0.22 -5.61 15 22 H 0.27 13.04 8.31 -92.71 -0.77 12.27 15 23 H 0.12 4.43 8.14 -2.38 -0.02 4.41 15 24 H 0.11 4.69 7.99 -2.39 -0.02 4.67 15 25 H 0.13 4.95 7.54 -2.91 -0.02 4.93 15 26 H 0.15 3.66 8.06 -2.91 -0.02 3.64 15 27 H 0.41 4.55 9.06 -74.06 -0.67 3.88 15 28 H 0.15 3.58 8.06 -2.91 -0.02 3.56 15 29 H 0.12 4.61 6.77 -2.91 -0.02 4.59 15 Total: -1.00 -59.06 264.85 2.50 -56.56 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.51 Total: 15.55 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 3.10 Total: -2.64 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.83 Total: -72.51 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.31 Total: -38.77 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -59.06 2.50 -56.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.844 kcal (2) G-P(sol) polarization free energy of solvation -59.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds