Wall clock time and date at job start Mon Mar 30 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46997 * 300.00126 * 3 2 1 6 6 H 1.48500 * 109.46850 * 59.99886 * 3 2 1 7 7 C 1.37880 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00706 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99212 * 0.02562 * 7 2 1 10 10 H 1.09001 * 112.41940 * 309.47875 * 9 7 2 11 11 C 1.52878 * 112.99387 * 78.91284 * 9 7 2 12 12 C 1.50560 * 82.45762 * 115.22512 * 11 9 7 13 13 O 1.21296 * 131.84956 * 180.23433 * 12 11 9 14 14 N 1.34603 * 96.30783 * 0.23261 * 12 11 9 15 15 C 1.40112 * 134.67180 * 180.02562 * 14 12 11 16 16 C 1.38845 * 120.00876 * 359.63701 * 15 14 12 17 17 C 1.38088 * 119.98112 * 179.97438 * 16 15 14 18 18 C 1.38725 * 120.01437 * 359.97438 * 17 16 15 19 19 O 1.35971 * 119.98581 * 179.74825 * 18 17 16 20 20 C 1.38719 * 120.03059 * 0.02562 * 18 17 16 21 21 C 1.38086 * 120.01629 * 0.02562 * 20 18 17 22 22 H 0.97004 * 120.00364 * 0.02562 * 1 2 3 23 23 H 1.08999 * 114.38084 * 228.83586 * 11 9 7 24 24 H 1.09007 * 114.37555 * 2.03881 * 11 9 7 25 25 H 1.08001 * 120.01175 * 359.96098 * 16 15 14 26 26 H 1.08004 * 119.99696 * 179.97438 * 17 16 15 27 27 H 0.96698 * 114.00754 * 89.99274 * 19 18 17 28 28 H 1.08002 * 119.99555 * 179.97438 * 20 18 17 29 29 H 1.07996 * 120.01279 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.4881 -2.5393 0.7757 11 6 0.7186 -2.8800 -1.3832 12 6 1.6835 -4.0243 -1.2209 13 8 1.9640 -4.9554 -1.9459 14 7 2.1308 -3.6688 -0.0022 15 6 3.0644 -4.1994 0.8979 16 6 3.7517 -5.3632 0.5800 17 6 4.6720 -5.8853 1.4672 18 6 4.9103 -5.2470 2.6756 19 8 5.8129 -5.7645 3.5510 20 6 4.2240 -4.0843 2.9938 21 6 3.3026 -3.5616 2.1080 22 1 -0.4851 0.8400 -0.0004 23 1 -0.3317 -3.1711 -1.3961 24 1 0.9843 -2.1809 -2.1762 25 1 3.5663 -5.8601 -0.3609 26 1 5.2064 -6.7908 1.2203 27 1 6.7143 -5.4373 3.4261 28 1 4.4097 -3.5880 3.9349 29 1 2.7680 -2.6566 2.3559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077331.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:51 Heat of formation + Delta-G solvation = -25.473328 kcal Electronic energy + Delta-G solvation = -15710.919500 eV Core-core repulsion = 12986.120887 eV Total energy + Delta-G solvation = -2724.798613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46428 -38.98578 -36.47773 -35.75951 -32.77648 -30.74716 -30.60601 -26.96487 -26.01285 -22.87054 -22.09714 -21.55071 -18.65838 -18.10917 -17.19301 -16.39022 -16.08431 -15.20293 -14.95290 -14.67456 -14.28425 -14.04477 -13.08058 -12.82705 -12.53744 -12.36918 -12.17440 -11.73088 -11.58526 -11.16527 -10.98602 -10.75738 -10.33307 -10.12956 -10.05775 -9.31803 -9.17679 -8.74184 -8.69740 -7.20987 -6.36313 -4.46674 1.51964 1.67241 3.13068 3.18386 3.22856 3.26733 3.65108 4.13119 4.20239 4.52831 4.77911 4.94390 5.24473 5.28871 5.69974 5.83693 5.92440 6.12407 6.27112 6.28441 6.43886 6.63349 6.66265 6.75873 6.91794 7.08294 7.43545 7.52084 7.61333 7.83942 7.87857 8.56751 8.91366 9.23159 10.69984 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.008378 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.131349 B = 3341.441994 C = 4213.645083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.258 3.742 10 H 0.065 0.935 11 C -0.154 4.154 12 C 0.514 3.486 13 O -0.536 6.536 14 N -0.573 5.573 15 C 0.202 3.798 16 C -0.155 4.155 17 C -0.114 4.114 18 C 0.051 3.949 19 O -0.501 6.501 20 C -0.114 4.114 21 C -0.132 4.132 22 H 0.268 0.732 23 H 0.102 0.898 24 H 0.116 0.884 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.380 0.620 28 H 0.127 0.873 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -4.363 3.600 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.158 3.842 10 H 0.083 0.917 11 C -0.194 4.194 12 C 0.304 3.696 13 O -0.413 6.413 14 N -0.297 5.297 15 C 0.106 3.894 16 C -0.176 4.176 17 C -0.133 4.133 18 C 0.006 3.994 19 O -0.310 6.310 20 C -0.133 4.133 21 C -0.153 4.153 22 H 0.078 0.922 23 H 0.120 0.880 24 H 0.134 0.866 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.234 0.766 28 H 0.145 0.855 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.312 -5.078 3.508 8.143 hybrid contribution 0.888 1.205 -0.115 1.502 sum 6.201 -3.873 3.392 8.059 Atomic orbital electron populations 1.69928 1.05999 1.27678 1.47973 1.24923 0.94906 0.99413 0.93880 0.86372 0.80153 0.82678 0.77944 1.19528 1.20604 1.20625 1.21094 0.93607 0.89085 1.53494 0.91384 1.20062 0.87195 0.83191 0.93712 0.91699 1.23411 0.98324 0.95027 1.02677 1.22828 0.81735 0.85214 0.79793 1.90588 1.64894 1.33920 1.51916 1.48381 1.36738 1.27913 1.16620 1.17779 0.89657 0.92320 0.89628 1.20828 0.98958 0.96631 1.01176 1.21089 0.99170 1.00229 0.92837 1.18293 0.96085 0.94713 0.90289 1.84861 1.20675 1.69559 1.55892 1.21173 0.97431 0.95012 0.99656 1.20840 1.00334 1.01437 0.92682 0.92196 0.87953 0.86595 0.85038 0.85722 0.76610 0.85481 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.31 13.28 55.43 0.74 -21.57 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.90 19.36 29.54 -169.99 -5.02 14.33 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.53 -13.08 8.82 -34.44 -0.30 -13.38 15 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 15 9 C 0.26 5.84 3.47 -81.48 -0.28 5.56 15 10 H 0.07 1.53 8.14 -51.93 -0.42 1.11 15 11 C -0.15 -3.20 8.13 -28.01 -0.23 -3.43 15 12 C 0.51 11.33 8.90 -23.40 -0.21 11.12 15 13 O -0.54 -12.65 16.92 5.54 0.09 -12.56 15 14 N -0.57 -12.41 3.32 -132.13 -0.44 -12.85 15 15 C 0.20 4.04 6.75 -83.62 -0.56 3.47 15 16 C -0.15 -2.85 9.66 -39.41 -0.38 -3.23 15 17 C -0.11 -1.81 9.98 -39.46 -0.39 -2.20 15 18 C 0.05 0.79 6.70 -39.22 -0.26 0.52 15 19 O -0.50 -6.58 13.50 -19.65 -0.27 -6.85 15 20 C -0.11 -1.80 9.98 -39.46 -0.39 -2.19 15 21 C -0.13 -2.42 9.73 -39.41 -0.38 -2.81 15 22 H 0.27 6.48 8.31 -40.82 -0.34 6.14 15 23 H 0.10 1.92 8.14 -51.93 -0.42 1.50 15 24 H 0.12 2.43 7.99 -51.93 -0.42 2.02 15 25 H 0.13 2.52 6.88 -52.49 -0.36 2.16 15 26 H 0.12 1.68 8.06 -52.48 -0.42 1.25 15 27 H 0.38 3.11 9.06 45.56 0.41 3.52 15 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 29 H 0.14 2.68 7.74 -52.49 -0.41 2.27 15 LS Contribution 265.68 15.07 4.00 4.00 Total: -1.00 -28.02 265.68 -6.40 -34.41 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.01 Total: 5.93 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.50 Total: -4.85 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.30 Total: -34.42 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.17 Total: -19.41 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.02 -6.40 -34.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077331.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.939 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds