Wall clock time and date at job start Mon Mar 30 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46997 * 300.00126 * 3 2 1 6 6 H 1.48500 * 109.46850 * 59.99886 * 3 2 1 7 7 C 1.37880 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00706 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99212 * 0.02562 * 7 2 1 10 10 H 1.09001 * 112.41940 * 309.47875 * 9 7 2 11 11 C 1.52878 * 112.99387 * 78.91284 * 9 7 2 12 12 C 1.50560 * 82.45762 * 115.22512 * 11 9 7 13 13 O 1.21296 * 131.84956 * 180.23433 * 12 11 9 14 14 N 1.34603 * 96.30783 * 0.23261 * 12 11 9 15 15 C 1.40112 * 134.67180 * 180.02562 * 14 12 11 16 16 C 1.38845 * 120.00876 * 359.63701 * 15 14 12 17 17 C 1.38088 * 119.98112 * 179.97438 * 16 15 14 18 18 C 1.38725 * 120.01437 * 359.97438 * 17 16 15 19 19 O 1.35971 * 119.98581 * 179.74825 * 18 17 16 20 20 C 1.38719 * 120.03059 * 0.02562 * 18 17 16 21 21 C 1.38086 * 120.01629 * 0.02562 * 20 18 17 22 22 H 0.97004 * 120.00364 * 0.02562 * 1 2 3 23 23 H 1.08999 * 114.38084 * 228.83586 * 11 9 7 24 24 H 1.09007 * 114.37555 * 2.03881 * 11 9 7 25 25 H 1.08001 * 120.01175 * 359.96098 * 16 15 14 26 26 H 1.08004 * 119.99696 * 179.97438 * 17 16 15 27 27 H 0.96698 * 114.00754 * 89.99274 * 19 18 17 28 28 H 1.08002 * 119.99555 * 179.97438 * 20 18 17 29 29 H 1.07996 * 120.01279 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.4881 -2.5393 0.7757 11 6 0.7186 -2.8800 -1.3832 12 6 1.6835 -4.0243 -1.2209 13 8 1.9640 -4.9554 -1.9459 14 7 2.1308 -3.6688 -0.0022 15 6 3.0644 -4.1994 0.8979 16 6 3.7517 -5.3632 0.5800 17 6 4.6720 -5.8853 1.4672 18 6 4.9103 -5.2470 2.6756 19 8 5.8129 -5.7645 3.5510 20 6 4.2240 -4.0843 2.9938 21 6 3.3026 -3.5616 2.1080 22 1 -0.4851 0.8400 -0.0004 23 1 -0.3317 -3.1711 -1.3961 24 1 0.9843 -2.1809 -2.1762 25 1 3.5663 -5.8601 -0.3609 26 1 5.2064 -6.7908 1.2203 27 1 6.7143 -5.4373 3.4261 28 1 4.4097 -3.5880 3.9349 29 1 2.7680 -2.6566 2.3559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077331.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:51 Heat of formation + Delta-G solvation = -43.663821 kcal Electronic energy + Delta-G solvation = -15711.708299 eV Core-core repulsion = 12986.120887 eV Total energy + Delta-G solvation = -2725.587412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11555 -40.31057 -37.94394 -37.28710 -34.62833 -32.21069 -31.98309 -28.64938 -27.70030 -24.42470 -23.51690 -23.15724 -20.18451 -19.30055 -18.99975 -18.14244 -17.69282 -16.77110 -16.40412 -16.17967 -15.93688 -15.38865 -14.41814 -14.37027 -14.26589 -13.91582 -13.68369 -13.39442 -13.04554 -12.86508 -12.61524 -12.45162 -12.07490 -11.76554 -11.40035 -11.02476 -10.84461 -10.59823 -10.03936 -8.73840 -8.22890 -6.40068 0.12978 0.32592 1.43027 1.47525 1.55204 1.58290 2.05128 2.41194 2.76021 3.04244 3.13265 3.35739 3.91550 3.97856 4.28737 4.35488 4.43736 4.56535 4.65515 4.95466 4.96522 5.13861 5.17138 5.24503 5.42820 5.59575 5.67307 5.88808 5.93607 6.03669 6.64999 6.91774 7.20255 7.34481 8.81940 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.008378 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.131349 B = 3341.441994 C = 4213.645083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.257 3.743 10 H 0.050 0.950 11 C -0.143 4.143 12 C 0.510 3.490 13 O -0.559 6.559 14 N -0.574 5.574 15 C 0.162 3.838 16 C -0.161 4.161 17 C -0.110 4.110 18 C 0.072 3.928 19 O -0.501 6.501 20 C -0.110 4.110 21 C -0.139 4.139 22 H 0.271 0.729 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.153 0.847 27 H 0.407 0.593 28 H 0.154 0.846 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 -4.485 4.690 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.165 4.165 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.156 3.844 10 H 0.068 0.932 11 C -0.183 4.183 12 C 0.301 3.699 13 O -0.438 6.438 14 N -0.297 5.297 15 C 0.068 3.932 16 C -0.182 4.182 17 C -0.129 4.129 18 C 0.027 3.973 19 O -0.314 6.314 20 C -0.129 4.129 21 C -0.160 4.160 22 H 0.081 0.919 23 H 0.140 0.860 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.170 0.830 27 H 0.266 0.734 28 H 0.171 0.829 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.774 -5.204 4.628 9.715 hybrid contribution 0.568 1.160 -0.313 1.329 sum 7.342 -4.044 4.314 9.427 Atomic orbital electron populations 1.69991 1.06933 1.28483 1.48560 1.25522 0.95570 1.01881 0.93528 0.85491 0.78741 0.79349 0.77996 1.19835 1.20249 1.20174 1.21155 0.93042 0.90170 1.53705 0.92707 1.19922 0.87136 0.83163 0.94150 0.93181 1.23392 0.99302 0.94259 1.01373 1.22960 0.81928 0.85172 0.79890 1.90562 1.65855 1.34838 1.52572 1.48319 1.37094 1.27484 1.16796 1.18116 0.90898 0.93793 0.90383 1.20813 0.99679 0.96291 1.01396 1.21345 0.98193 1.00906 0.92447 1.18294 0.95659 0.93590 0.89782 1.84799 1.22105 1.69472 1.54983 1.21420 0.96239 0.95192 1.00008 1.20813 1.01136 1.01211 0.92801 0.91926 0.86028 0.86818 0.86351 0.82976 0.73417 0.82859 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.76 13.28 21.45 0.28 -45.47 15 2 C 0.04 1.86 5.46 84.66 0.46 2.32 15 3 Si 0.96 39.46 29.54 68.60 2.03 41.48 15 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 5 H -0.28 -11.20 7.11 99.48 0.71 -10.50 15 6 H -0.28 -11.12 7.11 99.48 0.71 -10.41 15 7 C -0.54 -26.87 8.82 25.60 0.23 -26.65 15 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 15 9 C 0.26 11.86 3.47 36.28 0.13 11.99 15 10 H 0.05 2.45 8.14 -2.39 -0.02 2.43 15 11 C -0.14 -6.01 8.13 29.76 0.24 -5.77 15 12 C 0.51 22.90 8.90 79.69 0.71 23.61 15 13 O -0.56 -26.86 16.92 -3.08 -0.05 -26.92 15 14 N -0.57 -25.39 3.32 -690.42 -2.29 -27.68 15 15 C 0.16 6.53 6.75 38.11 0.26 6.79 15 16 C -0.16 -5.85 9.66 22.38 0.22 -5.64 15 17 C -0.11 -3.22 9.98 22.35 0.22 -2.99 15 18 C 0.07 1.98 6.70 22.50 0.15 2.13 15 19 O -0.50 -10.94 13.50 -93.22 -1.26 -12.20 15 20 C -0.11 -3.22 9.98 22.35 0.22 -2.99 15 21 C -0.14 -5.05 9.73 22.38 0.22 -4.83 15 22 H 0.27 13.02 8.31 -92.71 -0.77 12.25 15 23 H 0.12 4.57 8.14 -2.39 -0.02 4.55 15 24 H 0.11 4.82 7.99 -2.38 -0.02 4.80 15 25 H 0.12 4.59 6.88 -2.91 -0.02 4.57 15 26 H 0.15 3.57 8.06 -2.91 -0.02 3.54 15 27 H 0.41 4.68 9.06 -74.06 -0.67 4.01 15 28 H 0.15 3.64 8.06 -2.91 -0.02 3.62 15 29 H 0.13 4.92 7.74 -2.91 -0.02 4.90 15 Total: -1.00 -59.12 265.68 2.27 -56.85 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.51 Total: 15.97 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 3.05 Total: -2.03 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -2.01 Total: -73.15 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.31 Total: -39.11 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -59.12 2.27 -56.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077331.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.183 kcal (2) G-P(sol) polarization free energy of solvation -59.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds