Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36007 * 116.99735 * 2 1 4 4 C 1.38520 * 119.99989 * 0.02562 * 3 2 1 5 5 C 1.38475 * 120.33401 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.82767 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46859 * 90.00368 * 6 5 4 8 8 H 1.07997 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00066 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99472 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00187 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47385 * 89.99499 * 11 9 7 13 13 H 1.48497 * 109.47182 * 209.99896 * 11 9 7 14 14 H 1.48511 * 109.47045 * 329.99977 * 11 9 7 15 15 C 1.37827 * 120.33914 * 359.97438 * 5 4 3 16 16 C 1.39769 * 119.99258 * 0.02562 * 15 5 4 17 17 C 1.43201 * 120.16776 * 180.02562 * 16 15 5 18 18 N 5.85400 * 152.61053 * 0.05641 * 2 1 3 19 19 C 1.39067 * 119.99726 * 179.97438 * 3 2 1 20 20 O 1.35793 * 120.17043 * 0.04832 * 19 3 2 21 21 H 1.08996 * 109.47694 * 59.99475 * 1 2 3 22 22 H 1.09004 * 109.46922 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47001 * 299.99469 * 1 2 3 24 24 H 1.07999 * 119.83634 * 0.24633 * 4 3 2 25 25 H 1.08998 * 109.47153 * 210.00001 * 6 5 4 26 26 H 1.08993 * 109.47689 * 330.00012 * 6 5 4 27 27 H 0.97005 * 119.99266 * 180.02562 * 10 9 7 28 28 H 1.07995 * 120.00140 * 179.97438 * 15 5 4 29 29 H 0.96707 * 114.00147 * 269.97606 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2919 2.3736 0.0005 5 6 1.9133 3.6110 0.0011 6 6 1.0814 4.8676 0.0022 7 6 0.8048 5.2855 1.4235 8 1 1.1923 4.6996 2.2438 9 6 0.0569 6.4159 1.6766 10 7 -0.4145 7.1297 0.6776 11 14 -0.2865 6.9336 3.4382 12 1 0.7902 7.8430 3.9058 13 1 -1.5920 7.6385 3.5014 14 1 -0.3308 5.7306 4.3079 15 6 3.2888 3.6994 0.0016 16 6 4.0636 2.5362 0.0011 17 6 5.4930 2.6236 0.0022 18 7 6.6268 2.6931 0.0027 19 6 3.4352 1.2846 0.0005 20 8 4.1782 0.1480 0.0001 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.2136 2.3139 0.0050 25 1 1.6226 5.6622 -0.5113 26 1 0.1385 4.6796 -0.5113 27 1 -0.9403 7.9252 0.8557 28 1 3.7677 4.6674 0.0016 29 1 4.3934 -0.1816 0.8834 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260089999.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -35.293212 kcal Electronic energy + Delta-G solvation = -15392.059884 eV Core-core repulsion = 12666.835450 eV Total energy + Delta-G solvation = -2725.224435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27009 -37.93017 -36.72250 -36.06225 -33.26399 -31.05752 -30.12736 -27.71252 -26.52418 -23.54947 -23.20736 -21.19919 -18.75638 -17.62507 -16.58124 -16.44097 -16.27805 -15.79504 -15.06717 -14.65223 -14.09382 -13.64088 -13.27164 -13.12650 -12.60390 -12.54786 -12.23394 -12.05358 -11.79215 -11.34895 -11.25177 -10.74592 -10.67200 -10.63231 -10.50597 -9.79905 -9.54820 -8.55404 -8.36925 -7.78926 -6.17632 -4.22774 0.97755 1.64952 2.81528 3.21800 3.22985 3.30353 3.33436 3.35884 4.00779 4.20315 4.31808 4.37916 5.11150 5.18084 5.29017 5.32612 5.47153 5.51121 5.66121 5.79214 5.94188 6.39289 6.57109 6.75001 6.93085 7.30840 7.37299 7.54362 7.69092 7.77327 7.83265 8.12857 8.82169 9.42363 10.92073 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.007458 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.996579 B = 3753.313941 C = 4542.582760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.100 3.900 4 C -0.165 4.165 5 C -0.003 4.003 6 C 0.046 3.954 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.092 4.092 16 C -0.026 4.026 17 C 0.274 3.726 18 N -0.430 5.430 19 C 0.090 3.910 20 O -0.484 6.484 21 H 0.057 0.943 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.138 0.862 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.137 0.863 29 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -10.991 -0.388 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.054 3.946 4 C -0.185 4.185 5 C -0.003 4.003 6 C 0.010 3.990 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.113 4.113 16 C -0.030 4.030 17 C -0.041 4.041 18 N -0.106 5.106 19 C 0.042 3.958 20 O -0.292 6.292 21 H 0.076 0.924 22 H 0.115 0.885 23 H 0.078 0.922 24 H 0.156 0.844 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.436 -10.873 -1.044 11.191 hybrid contribution -0.945 0.429 1.492 1.817 sum 1.491 -10.444 0.448 10.559 Atomic orbital electron populations 1.23089 0.78393 1.03577 1.01978 1.86082 1.21265 1.26149 1.89010 1.19108 0.90887 0.85109 0.99452 1.21392 1.00740 0.91021 1.05315 1.20478 0.93252 0.96688 0.89901 1.18437 0.94255 0.88122 0.98228 1.21011 1.33518 1.09995 0.91128 0.92225 1.24995 0.95501 0.96249 0.97354 1.69945 1.35431 1.16724 1.30817 0.86524 0.77758 0.78845 0.84531 1.20472 1.21118 1.19747 1.21020 0.93390 0.96474 1.00417 1.16098 0.84548 0.93567 1.08821 1.25414 0.92348 0.93022 0.93285 1.81161 1.11957 1.08041 1.09434 1.17291 0.86208 0.84751 1.07553 1.84831 1.71834 1.39480 1.33084 0.92417 0.88512 0.92228 0.84396 0.94550 0.94728 0.92645 0.84523 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 15 2 O -0.31 -4.44 10.28 -34.34 -0.35 -4.79 15 3 C 0.10 1.57 6.69 -39.17 -0.26 1.31 15 4 C -0.17 -2.76 8.68 -39.39 -0.34 -3.10 15 5 C 0.00 -0.05 5.06 -104.69 -0.53 -0.58 15 6 C 0.05 1.06 5.09 -29.03 -0.15 0.91 15 7 C -0.52 -13.21 9.09 -34.44 -0.31 -13.53 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 10 N -0.89 -24.66 13.29 55.43 0.74 -23.92 15 11 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 15 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 15 C -0.09 -1.60 9.39 -39.16 -0.37 -1.97 15 16 C -0.03 -0.43 5.75 -106.72 -0.61 -1.04 15 17 C 0.27 4.55 14.87 -22.47 -0.33 4.21 15 18 N -0.43 -7.63 18.54 41.83 0.78 -6.85 15 19 C 0.09 1.41 6.72 -38.60 -0.26 1.15 15 20 O -0.48 -6.89 12.72 -33.67 -0.43 -7.32 15 21 H 0.06 0.58 7.66 -51.93 -0.40 0.18 15 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.62 7.65 -51.93 -0.40 0.22 15 24 H 0.14 2.15 6.27 -52.49 -0.33 1.82 15 25 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 26 H 0.03 0.82 8.08 -51.93 -0.42 0.40 15 27 H 0.26 6.93 8.31 -40.82 -0.34 6.60 15 28 H 0.14 2.29 8.06 -52.49 -0.42 1.87 15 29 H 0.38 3.79 9.06 45.56 0.41 4.20 15 LS Contribution 271.36 15.07 4.09 4.09 Total: -1.00 -29.39 271.36 -4.41 -33.81 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -1.94 Total: -0.38 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.28 Total: -9.87 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 1.51 Total: -30.78 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.78 Total: -12.11 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.39 -4.41 -33.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089999.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.486 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds