Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36007 * 116.99735 * 2 1 4 4 C 1.38520 * 119.99989 * 0.02562 * 3 2 1 5 5 C 1.38475 * 120.33401 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.82767 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46859 * 90.00368 * 6 5 4 8 8 H 1.07997 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00066 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99472 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00187 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47385 * 89.99499 * 11 9 7 13 13 H 1.48497 * 109.47182 * 209.99896 * 11 9 7 14 14 H 1.48511 * 109.47045 * 329.99977 * 11 9 7 15 15 C 1.37827 * 120.33914 * 359.97438 * 5 4 3 16 16 C 1.39769 * 119.99258 * 0.02562 * 15 5 4 17 17 C 1.43201 * 120.16776 * 180.02562 * 16 15 5 18 18 N 5.85400 * 152.61053 * 0.05641 * 2 1 3 19 19 C 1.39067 * 119.99726 * 179.97438 * 3 2 1 20 20 O 1.35793 * 120.17043 * 0.04832 * 19 3 2 21 21 H 1.08996 * 109.47694 * 59.99475 * 1 2 3 22 22 H 1.09004 * 109.46922 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47001 * 299.99469 * 1 2 3 24 24 H 1.07999 * 119.83634 * 0.24633 * 4 3 2 25 25 H 1.08998 * 109.47153 * 210.00001 * 6 5 4 26 26 H 1.08993 * 109.47689 * 330.00012 * 6 5 4 27 27 H 0.97005 * 119.99266 * 180.02562 * 10 9 7 28 28 H 1.07995 * 120.00140 * 179.97438 * 15 5 4 29 29 H 0.96707 * 114.00147 * 269.97606 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2919 2.3736 0.0005 5 6 1.9133 3.6110 0.0011 6 6 1.0814 4.8676 0.0022 7 6 0.8048 5.2855 1.4235 8 1 1.1923 4.6996 2.2438 9 6 0.0569 6.4159 1.6766 10 7 -0.4145 7.1297 0.6776 11 14 -0.2865 6.9336 3.4382 12 1 0.7902 7.8430 3.9058 13 1 -1.5920 7.6385 3.5014 14 1 -0.3308 5.7306 4.3079 15 6 3.2888 3.6994 0.0016 16 6 4.0636 2.5362 0.0011 17 6 5.4930 2.6236 0.0022 18 7 6.6268 2.6931 0.0027 19 6 3.4352 1.2846 0.0005 20 8 4.1782 0.1480 0.0001 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 0.2136 2.3139 0.0050 25 1 1.6226 5.6622 -0.5113 26 1 0.1385 4.6796 -0.5113 27 1 -0.9403 7.9252 0.8557 28 1 3.7677 4.6674 0.0016 29 1 4.3934 -0.1816 0.8834 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260089999.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -53.882370 kcal Electronic energy + Delta-G solvation = -15392.865971 eV Core-core repulsion = 12666.835450 eV Total energy + Delta-G solvation = -2726.030521 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.51149 -39.09050 -38.00847 -37.41937 -35.11675 -32.62853 -31.43059 -29.02246 -27.88911 -25.16872 -24.61234 -22.57387 -20.00523 -18.90630 -18.43365 -17.78065 -17.54297 -16.93852 -16.53165 -16.13918 -15.25082 -14.94626 -14.64551 -14.45680 -14.39169 -13.97856 -13.70204 -13.49688 -12.98150 -12.93446 -12.65293 -12.42263 -12.29893 -11.97387 -11.74017 -11.50294 -11.34936 -10.56012 -9.72332 -9.09387 -8.16584 -6.28306 -0.33662 0.33936 1.44892 1.46483 1.50332 1.56118 1.88242 2.22909 2.43605 2.74824 2.91766 3.13027 3.16744 3.95061 4.03773 4.26842 4.43617 4.48153 4.49789 4.68457 4.83348 5.07067 5.16782 5.22013 5.39673 5.56731 5.78578 5.86291 6.18086 6.25912 6.36147 6.78361 6.84673 7.40545 8.92619 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.007458 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.996579 B = 3753.313941 C = 4542.582760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.105 3.895 4 C -0.159 4.159 5 C -0.024 4.024 6 C 0.054 3.946 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.263 1.263 15 C -0.093 4.093 16 C -0.024 4.024 17 C 0.289 3.711 18 N -0.449 5.449 19 C 0.106 3.894 20 O -0.488 6.488 21 H 0.062 0.938 22 H 0.127 0.873 23 H 0.061 0.939 24 H 0.147 0.853 25 H 0.014 0.986 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.135 0.865 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -12.663 0.496 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.230 6.230 3 C 0.059 3.941 4 C -0.179 4.179 5 C -0.024 4.024 6 C 0.017 3.983 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.187 1.187 15 C -0.114 4.114 16 C -0.028 4.028 17 C -0.026 4.026 18 N -0.125 5.125 19 C 0.058 3.942 20 O -0.300 6.300 21 H 0.080 0.920 22 H 0.145 0.855 23 H 0.080 0.920 24 H 0.164 0.836 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.466 -12.573 -0.142 12.813 hybrid contribution -0.950 0.809 1.181 1.718 sum 1.516 -11.764 1.039 11.906 Atomic orbital electron populations 1.23407 0.76404 1.05782 1.02320 1.86091 1.23248 1.25026 1.88618 1.19030 0.90908 0.85334 0.98832 1.21393 1.01314 0.90605 1.04553 1.20060 0.93445 0.95806 0.93110 1.18174 0.93891 0.89572 0.96653 1.21382 1.32808 1.09831 0.92456 0.92113 1.25800 0.95532 0.96474 1.01078 1.70060 1.36510 1.17322 1.32840 0.85552 0.77456 0.78621 0.80083 1.20258 1.20958 1.18739 1.20916 0.92927 0.97003 1.00521 1.15949 0.84137 0.93466 1.09267 1.25346 0.92187 0.92416 0.92655 1.81179 1.12479 1.08649 1.10211 1.17311 0.86423 0.84910 1.05555 1.84770 1.71470 1.38698 1.35098 0.91960 0.85476 0.92001 0.83580 0.96757 0.96388 0.92657 0.84695 0.73497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 15 2 O -0.32 -8.11 10.28 -79.70 -0.82 -8.93 15 3 C 0.11 3.07 6.69 22.54 0.15 3.22 15 4 C -0.16 -5.14 8.68 22.39 0.19 -4.94 15 5 C -0.02 -0.90 5.06 -19.91 -0.10 -1.00 15 6 C 0.05 2.53 5.09 29.10 0.15 2.68 15 7 C -0.53 -27.05 9.09 25.60 0.23 -26.82 15 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 15 9 C 0.01 0.52 5.46 84.66 0.46 0.98 15 10 N -0.93 -52.24 13.29 21.45 0.28 -51.96 15 11 Si 0.96 41.41 29.54 68.60 2.03 43.43 15 12 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 13 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 14 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 15 C -0.09 -3.18 9.39 22.54 0.21 -2.97 15 16 C -0.02 -0.74 5.75 -21.22 -0.12 -0.87 15 17 C 0.29 9.15 14.87 88.33 1.31 10.46 15 18 N -0.45 -15.34 18.54 19.00 0.35 -14.98 15 19 C 0.11 3.09 6.72 22.91 0.15 3.24 15 20 O -0.49 -12.45 12.72 -77.29 -0.98 -13.43 15 21 H 0.06 1.11 7.66 -2.39 -0.02 1.09 15 22 H 0.13 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.06 1.13 7.65 -2.39 -0.02 1.11 15 24 H 0.15 4.38 6.27 -2.91 -0.02 4.37 15 25 H 0.01 0.71 8.08 -2.39 -0.02 0.69 15 26 H 0.02 0.88 8.08 -2.39 -0.02 0.86 15 27 H 0.26 14.12 8.31 -92.70 -0.77 13.35 15 28 H 0.14 4.58 8.06 -2.91 -0.02 4.56 15 29 H 0.41 6.64 9.06 -74.05 -0.67 5.97 15 Total: -1.00 -61.74 271.36 5.14 -56.60 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 0.52 Total: 3.90 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 3.76 Total: -14.63 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: 0.64 Total: -66.94 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.80 Total: -22.36 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -61.74 5.14 -56.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089999.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -61.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds