Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86807 * 119.99824 * 2 1 4 4 H 1.48502 * 109.46654 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46874 * 299.99839 * 3 2 1 6 6 H 1.48492 * 109.47063 * 59.99650 * 3 2 1 7 7 C 1.39017 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.37505 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.76390 * 180.31313 * 9 7 2 11 11 C 1.36101 * 106.63526 * 180.13308 * 10 9 7 12 12 C 1.48394 * 125.66317 * 179.87888 * 11 10 9 13 13 C 1.39376 * 120.11080 * 359.69027 * 12 11 10 14 14 C 1.38003 * 119.92746 * 180.02562 * 13 12 11 15 15 C 1.38314 * 120.14715 * 359.97438 * 14 13 12 16 16 C 1.38529 * 120.21850 * 359.75581 * 15 14 13 17 17 F 1.35099 * 119.96177 * 180.26041 * 16 15 14 18 18 C 1.38255 * 120.07159 * 0.52435 * 16 15 14 19 19 N 1.34228 * 108.67165 * 359.61119 * 11 10 9 20 20 N 1.28730 * 109.88732 * 0.24271 * 19 11 10 21 21 H 0.97002 * 119.99824 * 0.02562 * 1 2 3 22 22 H 1.08003 * 126.68643 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.03214 * 0.02562 * 13 12 11 24 24 H 1.08000 * 119.92494 * 180.02562 * 14 13 12 25 25 H 1.07994 * 119.88514 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.07722 * 179.74168 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3464 0.0006 5 1 1.8877 2.3965 -1.2126 6 1 1.8877 2.3965 1.2124 7 6 2.0077 -1.2039 0.0005 8 1 3.0876 -1.2039 0.0001 9 7 1.3202 -2.3947 0.0005 10 6 1.8587 -3.6489 0.0070 11 6 0.8142 -4.5215 0.0012 12 6 0.9231 -6.0014 0.0025 13 6 2.1769 -6.6102 0.0036 14 6 2.2738 -7.9868 0.0042 15 6 1.1294 -8.7637 0.0043 16 6 -0.1198 -8.1650 0.0088 17 9 -1.2341 -8.9289 0.0141 18 6 -0.2274 -6.7867 0.0023 19 7 -0.3309 -3.8210 0.0001 20 7 -0.0727 -2.5599 -0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 2.9091 -3.9001 0.0135 23 1 3.0715 -6.0052 0.0040 24 1 3.2453 -8.4586 0.0055 25 1 1.2102 -9.8407 0.0052 26 1 -1.2013 -6.3198 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = 62.519376 kcal Electronic energy + Delta-G solvation = -14934.312365 eV Core-core repulsion = 12122.161849 eV Total energy + Delta-G solvation = -2812.150516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.55685 -40.30209 -38.26330 -34.31970 -31.82141 -31.31021 -30.20292 -27.82674 -25.82357 -22.75214 -22.49517 -21.01215 -19.88980 -18.16832 -16.68016 -15.88077 -15.68754 -15.54729 -15.25392 -14.58093 -14.07273 -13.67292 -13.27254 -13.16369 -12.77014 -12.06470 -12.05438 -11.61293 -11.49591 -11.37975 -10.84231 -10.66369 -10.24998 -9.82433 -9.46899 -9.06227 -8.81150 -8.42657 -7.23404 -6.97589 -4.77885 1.43025 1.59529 2.72221 2.87576 2.95558 3.19477 3.56944 3.66432 4.39604 4.49311 4.60631 4.68008 5.10146 5.19634 5.43748 5.55314 5.77778 6.10979 6.19155 6.30073 6.43476 6.57294 6.59014 6.68243 6.83367 7.11539 7.28275 7.54660 7.73645 8.33093 8.91239 9.94924 10.00071 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.063351 B = 0.005466 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.876951 B = 5121.286285 C = 5553.315661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.046 3.954 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.310 4.310 8 H 0.126 0.874 9 N -0.144 5.144 10 C -0.100 4.100 11 C -0.057 4.057 12 C 0.074 3.926 13 C -0.137 4.137 14 C -0.088 4.088 15 C -0.182 4.182 16 C 0.099 3.901 17 F -0.147 7.147 18 C -0.150 4.150 19 N -0.305 5.305 20 N -0.084 5.084 21 H 0.285 0.715 22 H 0.162 0.838 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -7.431 0.015 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.447 4.447 8 H 0.143 0.857 9 N 0.088 4.912 10 C -0.255 4.255 11 C -0.201 4.201 12 C 0.071 3.929 13 C -0.157 4.157 14 C -0.106 4.106 15 C -0.202 4.202 16 C 0.079 3.921 17 F -0.126 7.126 18 C -0.170 4.170 19 N -0.166 5.166 20 N -0.061 5.061 21 H 0.096 0.904 22 H 0.179 0.821 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.414 -6.546 0.011 7.895 hybrid contribution 1.261 0.221 0.003 1.280 sum 5.675 -6.325 0.014 8.498 Atomic orbital electron populations 1.70141 1.06526 1.29430 1.31834 1.25858 0.95868 1.01081 0.94685 0.85577 0.79703 0.78986 0.78916 1.18220 1.19425 1.19430 1.20305 0.92444 0.80381 1.51547 0.85689 1.46654 1.06919 1.04708 1.32902 1.22462 0.98893 0.84821 1.19368 1.19272 0.89898 0.91824 1.19123 1.17767 0.91917 0.89919 0.93295 1.21143 0.97059 0.94397 1.03108 1.20779 0.97617 0.93328 0.98873 1.20946 0.91221 1.00312 1.07728 1.17608 0.82296 0.88768 1.03386 1.91454 1.51388 1.75606 1.94138 1.21175 1.00648 0.91016 1.04190 1.74252 1.24975 1.00661 1.16681 1.82558 0.88801 1.06672 1.28055 0.90405 0.82076 0.85471 0.85496 0.85613 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.71 11.87 55.50 0.66 -19.05 15 2 C 0.05 1.09 5.50 -17.51 -0.10 1.00 15 3 Si 0.95 17.31 29.55 -169.99 -5.02 12.29 15 4 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.49 15 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.31 -7.66 10.30 -14.72 -0.15 -7.81 15 8 H 0.13 2.69 7.83 -52.49 -0.41 2.28 15 9 N -0.14 -3.82 3.77 -11.26 -0.04 -3.86 15 10 C -0.10 -2.30 10.92 -16.25 -0.18 -2.47 15 11 C -0.06 -1.34 6.90 -83.41 -0.58 -1.92 15 12 C 0.07 1.44 5.88 -104.90 -0.62 0.82 15 13 C -0.14 -2.16 9.55 -39.24 -0.37 -2.53 15 14 C -0.09 -1.17 10.03 -39.64 -0.40 -1.56 15 15 C -0.18 -2.55 10.02 -39.45 -0.40 -2.95 15 16 C 0.10 1.63 7.29 -39.47 -0.29 1.34 15 17 F -0.15 -2.42 17.26 2.25 0.04 -2.38 15 18 C -0.15 -2.83 9.67 -39.18 -0.38 -3.20 15 19 N -0.30 -8.22 11.97 32.93 0.39 -7.83 15 20 N -0.08 -2.43 11.69 60.35 0.71 -1.73 15 21 H 0.29 6.69 8.31 -40.82 -0.34 6.35 15 22 H 0.16 3.00 7.25 -52.48 -0.38 2.62 15 23 H 0.13 1.76 6.97 -52.49 -0.37 1.40 15 24 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 25 H 0.13 1.43 8.06 -52.49 -0.42 1.00 15 26 H 0.14 2.75 7.84 -52.49 -0.41 2.34 15 LS Contribution 247.81 15.07 3.73 3.73 Total: -1.00 -29.82 247.81 -4.53 -34.35 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -1.55 Total: 3.76 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.45 Total: -19.29 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 1.72 Total: -32.46 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.02 Total: 12.29 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.82 -4.53 -34.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.871 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds