Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86807 * 119.99824 * 2 1 4 4 H 1.48502 * 109.46654 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46874 * 299.99839 * 3 2 1 6 6 H 1.48492 * 109.47063 * 59.99650 * 3 2 1 7 7 C 1.39017 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.37505 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.76390 * 180.31313 * 9 7 2 11 11 C 1.36101 * 106.63526 * 180.13308 * 10 9 7 12 12 C 1.48394 * 125.66317 * 179.87888 * 11 10 9 13 13 C 1.39376 * 120.11080 * 359.69027 * 12 11 10 14 14 C 1.38003 * 119.92746 * 180.02562 * 13 12 11 15 15 C 1.38314 * 120.14715 * 359.97438 * 14 13 12 16 16 C 1.38529 * 120.21850 * 359.75581 * 15 14 13 17 17 F 1.35099 * 119.96177 * 180.26041 * 16 15 14 18 18 C 1.38255 * 120.07159 * 0.52435 * 16 15 14 19 19 N 1.34228 * 108.67165 * 359.61119 * 11 10 9 20 20 N 1.28730 * 109.88732 * 0.24271 * 19 11 10 21 21 H 0.97002 * 119.99824 * 0.02562 * 1 2 3 22 22 H 1.08003 * 126.68643 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.03214 * 0.02562 * 13 12 11 24 24 H 1.08000 * 119.92494 * 180.02562 * 14 13 12 25 25 H 1.07994 * 119.88514 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.07722 * 179.74168 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3464 0.0006 5 1 1.8877 2.3965 -1.2126 6 1 1.8877 2.3965 1.2124 7 6 2.0077 -1.2039 0.0005 8 1 3.0876 -1.2039 0.0001 9 7 1.3202 -2.3947 0.0005 10 6 1.8587 -3.6489 0.0070 11 6 0.8142 -4.5215 0.0012 12 6 0.9231 -6.0014 0.0025 13 6 2.1769 -6.6102 0.0036 14 6 2.2738 -7.9868 0.0042 15 6 1.1294 -8.7637 0.0043 16 6 -0.1198 -8.1650 0.0088 17 9 -1.2341 -8.9289 0.0141 18 6 -0.2274 -6.7867 0.0023 19 7 -0.3309 -3.8210 0.0001 20 7 -0.0727 -2.5599 -0.0003 21 1 -0.4850 0.8401 -0.0004 22 1 2.9091 -3.9001 0.0135 23 1 3.0715 -6.0052 0.0040 24 1 3.2453 -8.4586 0.0055 25 1 1.2102 -9.8407 0.0052 26 1 -1.2013 -6.3198 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = 43.719703 kcal Electronic energy + Delta-G solvation = -14935.127580 eV Core-core repulsion = 12122.161849 eV Total energy + Delta-G solvation = -2812.965731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85246 -42.13330 -39.57906 -36.13032 -33.54069 -32.93767 -31.50526 -29.45576 -27.65609 -24.22309 -23.96539 -22.69912 -21.56914 -19.83977 -18.11887 -17.54774 -17.06395 -16.87234 -16.56346 -16.08626 -15.95732 -15.19794 -14.83913 -14.51429 -14.10175 -13.72290 -13.45593 -13.34195 -12.99640 -12.65359 -12.18574 -12.02915 -11.94191 -11.61018 -11.32426 -10.76907 -10.44882 -9.71320 -8.90227 -8.75421 -6.69026 0.10931 0.32420 1.05987 1.37661 1.59982 1.62126 2.03177 2.08483 2.66188 2.86084 3.00980 3.30732 3.76243 3.94413 4.16158 4.33371 4.44411 4.51048 4.67611 4.81008 4.98503 5.06496 5.22072 5.23528 5.42926 5.64737 5.84144 5.90245 6.04907 6.52659 7.08588 8.06457 8.25374 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.063351 B = 0.005466 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.876951 B = 5121.286285 C = 5553.315661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C -0.003 4.003 3 Si 1.031 2.969 4 H -0.234 1.234 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.156 0.844 9 N -0.160 5.160 10 C -0.106 4.106 11 C -0.052 4.052 12 C 0.036 3.964 13 C -0.126 4.126 14 C -0.071 4.071 15 C -0.159 4.159 16 C 0.085 3.915 17 F -0.150 7.150 18 C -0.170 4.170 19 N -0.348 5.348 20 N -0.148 5.148 21 H 0.289 0.711 22 H 0.207 0.793 23 H 0.151 0.849 24 H 0.179 0.821 25 H 0.164 0.836 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.851 -8.951 0.019 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.219 4.219 3 Si 0.848 3.152 4 H -0.156 1.156 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.472 4.472 8 H 0.173 0.827 9 N 0.071 4.929 10 C -0.260 4.260 11 C -0.198 4.198 12 C 0.033 3.967 13 C -0.146 4.146 14 C -0.088 4.088 15 C -0.178 4.178 16 C 0.066 3.934 17 F -0.129 7.129 18 C -0.190 4.190 19 N -0.207 5.207 20 N -0.123 5.123 21 H 0.099 0.901 22 H 0.223 0.777 23 H 0.168 0.832 24 H 0.196 0.804 25 H 0.182 0.818 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.083 -8.117 0.016 11.456 hybrid contribution 0.163 0.442 0.002 0.471 sum 8.247 -7.675 0.018 11.266 Atomic orbital electron populations 1.70307 1.08955 1.30766 1.33338 1.27203 0.96525 1.05114 0.93030 0.84370 0.79234 0.73020 0.78604 1.15612 1.19335 1.19343 1.21190 0.93963 0.80461 1.51608 0.82707 1.47002 1.06630 1.06271 1.33026 1.23221 1.00745 0.83634 1.18412 1.20056 0.89103 0.94089 1.16536 1.17844 0.93921 0.87859 0.97053 1.21469 0.95921 0.96008 1.01154 1.21327 0.99538 0.91984 0.95981 1.21454 0.89844 1.02384 1.04160 1.17752 0.83517 0.87810 1.04321 1.91445 1.51900 1.75329 1.94250 1.21065 0.99586 0.92532 1.05836 1.74200 1.26860 1.00809 1.18806 1.82485 0.90628 1.07576 1.31634 0.90055 0.77665 0.83165 0.80359 0.81835 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.05 11.87 21.66 0.26 -43.79 15 2 C 0.00 -0.16 5.50 84.97 0.47 0.30 15 3 Si 1.03 34.87 29.55 68.60 2.03 36.90 15 4 H -0.23 -6.91 7.11 99.48 0.71 -6.20 15 5 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 6 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 7 C -0.34 -16.63 10.30 83.99 0.87 -15.77 15 8 H 0.16 6.40 7.83 -2.91 -0.02 6.38 15 9 N -0.16 -8.70 3.77 -189.55 -0.71 -9.41 15 10 C -0.11 -4.86 10.92 83.47 0.91 -3.95 15 11 C -0.05 -2.51 6.90 40.99 0.28 -2.22 15 12 C 0.04 1.38 5.88 -20.04 -0.12 1.26 15 13 C -0.13 -3.51 9.55 22.49 0.21 -3.29 15 14 C -0.07 -1.48 10.03 22.23 0.22 -1.25 15 15 C -0.16 -3.72 10.02 22.36 0.22 -3.50 15 16 C 0.09 2.70 7.29 22.34 0.16 2.86 15 17 F -0.15 -4.84 17.26 44.97 0.78 -4.06 15 18 C -0.17 -6.55 9.67 22.53 0.22 -6.34 15 19 N -0.35 -19.98 11.97 -49.72 -0.60 -20.58 15 20 N -0.15 -9.03 11.69 37.02 0.43 -8.60 15 21 H 0.29 14.24 8.31 -92.71 -0.77 13.47 15 22 H 0.21 7.11 7.25 -2.91 -0.02 7.09 15 23 H 0.15 3.45 6.97 -2.91 -0.02 3.43 15 24 H 0.18 2.05 8.06 -2.91 -0.02 2.02 15 25 H 0.16 2.67 8.06 -2.91 -0.02 2.65 15 26 H 0.11 4.73 7.84 -2.91 -0.02 4.71 15 Total: -1.00 -71.24 247.81 6.85 -64.39 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.22 Total: 17.04 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.45 Total: -31.89 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -0.62 Total: -82.38 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -71.24 6.85 -64.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.108 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds