Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48495 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46959 * 300.00171 * 3 2 1 6 6 H 1.48500 * 109.47122 * 59.99943 * 3 2 1 7 7 C 1.39024 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99514 * 180.02562 * 7 2 1 9 9 N 1.37491 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.36518 * 126.76550 * 179.97438 * 9 7 2 11 11 C 1.36090 * 106.63477 * 179.97438 * 10 9 7 12 12 C 1.48386 * 125.66645 * 180.02562 * 11 10 9 13 13 C 1.39330 * 120.13118 * 359.72554 * 12 11 10 14 14 C 1.38011 * 119.90330 * 179.72139 * 13 12 11 15 15 C 1.38358 * 120.16702 * 0.55049 * 14 13 12 16 16 C 1.38273 * 120.26981 * 359.72515 * 15 14 13 17 17 C 1.38258 * 120.09690 * 359.97438 * 16 15 14 18 18 F 1.35103 * 120.08985 * 179.97438 * 17 16 15 19 19 N 1.34234 * 108.67209 * 0.02562 * 11 10 9 20 20 N 1.28721 * 109.89214 * 0.02562 * 19 11 10 21 21 H 0.97004 * 120.00152 * 359.97438 * 1 2 3 22 22 H 1.08007 * 126.68444 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.04728 * 0.02562 * 13 12 11 24 24 H 1.07993 * 119.91697 * 180.25725 * 14 13 12 25 25 H 1.08005 * 119.86433 * 179.69778 * 15 14 13 26 26 H 1.08005 * 119.95189 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.7065 1.3463 -0.0006 5 1 1.8877 2.3964 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0076 -1.2040 -0.0005 8 1 3.0875 -1.2040 -0.0001 9 7 1.3200 -2.3947 -0.0005 10 6 1.8586 -3.6492 -0.0015 11 6 0.8140 -4.5215 -0.0005 12 6 0.9227 -6.0014 -0.0005 13 6 2.1757 -6.6107 -0.0074 14 6 2.2714 -7.9874 -0.0015 15 6 1.1262 -8.7640 -0.0003 16 6 -0.1209 -8.1667 0.0007 17 6 -0.2295 -6.7884 0.0011 18 9 -1.4481 -6.2051 0.0016 19 7 -0.3310 -3.8209 0.0005 20 7 -0.0729 -2.5599 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 2.9090 -3.9004 -0.0021 23 1 3.0708 -6.0064 -0.0123 24 1 3.2425 -8.4599 -0.0026 25 1 1.2068 -9.8410 -0.0007 26 1 -1.0114 -8.7778 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = 67.406113 kcal Electronic energy + Delta-G solvation = -15209.362622 eV Core-core repulsion = 12397.424010 eV Total energy + Delta-G solvation = -2811.938612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.03994 -40.20110 -38.25089 -34.27828 -31.81151 -31.37022 -30.05228 -27.76402 -25.77657 -22.77812 -22.33173 -20.93789 -19.82029 -18.10117 -16.80728 -15.66807 -15.59359 -15.35054 -14.89601 -14.39100 -13.94786 -13.91747 -13.07756 -13.04514 -12.51540 -12.01493 -11.94608 -11.70020 -11.47996 -11.34355 -10.79103 -10.62514 -10.22906 -9.72655 -9.35334 -9.05030 -8.76765 -8.37772 -7.13344 -6.93070 -4.72883 1.47202 1.60876 2.75657 2.89891 2.97808 3.23985 3.60237 3.73748 4.46360 4.50437 4.71900 4.81014 5.11762 5.21406 5.34397 5.58996 5.71119 6.13372 6.22220 6.31824 6.46069 6.62607 6.65267 6.73912 6.86876 7.02266 7.31190 7.60704 7.78496 8.37869 8.96918 10.01908 10.05490 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.055717 B = 0.006247 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.418521 B = 4481.242915 C = 4973.818795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.046 3.954 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.311 4.311 8 H 0.125 0.875 9 N -0.145 5.145 10 C -0.101 4.101 11 C -0.058 4.058 12 C 0.009 3.991 13 C -0.101 4.101 14 C -0.129 4.129 15 C -0.119 4.119 16 C -0.156 4.156 17 C 0.100 3.900 18 F -0.123 7.123 19 N -0.294 5.294 20 N -0.086 5.086 21 H 0.285 0.715 22 H 0.161 0.839 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -8.658 -0.006 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.448 4.448 8 H 0.142 0.858 9 N 0.087 4.913 10 C -0.257 4.257 11 C -0.202 4.202 12 C 0.006 3.994 13 C -0.120 4.120 14 C -0.147 4.147 15 C -0.138 4.138 16 C -0.175 4.175 17 C 0.080 3.920 18 F -0.101 7.101 19 N -0.155 5.155 20 N -0.062 5.062 21 H 0.095 0.905 22 H 0.178 0.822 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.212 -7.714 -0.005 8.789 hybrid contribution 1.273 0.450 0.001 1.351 sum 5.485 -7.264 -0.004 9.102 Atomic orbital electron populations 1.70148 1.06517 1.29355 1.31913 1.25855 0.95857 1.01047 0.94736 0.85581 0.79681 0.79044 0.78883 1.18252 1.19455 1.19451 1.20284 0.92407 0.80424 1.51643 0.85764 1.46664 1.06974 1.04635 1.32990 1.22405 0.98738 0.84857 1.19661 1.19185 0.90104 0.91599 1.19344 1.18112 0.92079 0.90443 0.98800 1.20962 0.96168 0.94426 1.00492 1.20975 0.98372 0.93469 1.01910 1.20818 0.91636 0.99515 1.01849 1.21001 0.99016 0.92604 1.04830 1.17723 0.80611 0.90496 1.03211 1.91550 1.40499 1.84724 1.93361 1.74392 1.24605 1.00401 1.16099 1.82564 0.88715 1.06901 1.28068 0.90450 0.82155 0.85316 0.85920 0.85903 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.18 11.87 55.50 0.66 -19.52 15 2 C 0.05 1.12 5.50 -17.51 -0.10 1.02 15 3 Si 0.95 17.70 29.55 -169.99 -5.02 12.67 15 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.31 -7.88 10.30 -14.72 -0.15 -8.03 15 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 15 9 N -0.14 -3.96 3.77 -11.26 -0.04 -4.00 15 10 C -0.10 -2.41 10.92 -16.24 -0.18 -2.59 15 11 C -0.06 -1.44 6.89 -83.41 -0.57 -2.01 15 12 C 0.01 0.19 5.88 -104.83 -0.62 -0.43 15 13 C -0.10 -1.62 9.55 -39.26 -0.37 -1.99 15 14 C -0.13 -1.70 10.03 -39.62 -0.40 -2.10 15 15 C -0.12 -1.54 10.04 -39.52 -0.40 -1.94 15 16 C -0.16 -2.38 10.02 -39.56 -0.40 -2.77 15 17 C 0.10 1.97 7.28 -39.09 -0.28 1.69 15 18 F -0.12 -2.74 15.75 2.25 0.04 -2.71 15 19 N -0.29 -8.36 10.96 32.93 0.36 -7.99 15 20 N -0.09 -2.56 11.69 60.35 0.71 -1.86 15 21 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 22 H 0.16 3.10 7.25 -52.48 -0.38 2.72 15 23 H 0.13 1.83 6.97 -52.49 -0.37 1.46 15 24 H 0.12 1.22 8.06 -52.49 -0.42 0.79 15 25 H 0.12 1.18 8.06 -52.48 -0.42 0.76 15 26 H 0.13 1.64 8.06 -52.48 -0.42 1.22 15 LS Contribution 245.86 15.07 3.71 3.71 Total: -1.00 -31.82 245.86 -4.63 -36.45 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -1.56 Total: 2.41 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.47 Total: -19.15 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 1.68 Total: -33.38 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.67 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.82 -4.63 -36.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.855 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds