Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48495 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46959 * 300.00171 * 3 2 1 6 6 H 1.48500 * 109.47122 * 59.99943 * 3 2 1 7 7 C 1.39024 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99514 * 180.02562 * 7 2 1 9 9 N 1.37491 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.36518 * 126.76550 * 179.97438 * 9 7 2 11 11 C 1.36090 * 106.63477 * 179.97438 * 10 9 7 12 12 C 1.48386 * 125.66645 * 180.02562 * 11 10 9 13 13 C 1.39330 * 120.13118 * 359.72554 * 12 11 10 14 14 C 1.38011 * 119.90330 * 179.72139 * 13 12 11 15 15 C 1.38358 * 120.16702 * 0.55049 * 14 13 12 16 16 C 1.38273 * 120.26981 * 359.72515 * 15 14 13 17 17 C 1.38258 * 120.09690 * 359.97438 * 16 15 14 18 18 F 1.35103 * 120.08985 * 179.97438 * 17 16 15 19 19 N 1.34234 * 108.67209 * 0.02562 * 11 10 9 20 20 N 1.28721 * 109.89214 * 0.02562 * 19 11 10 21 21 H 0.97004 * 120.00152 * 359.97438 * 1 2 3 22 22 H 1.08007 * 126.68444 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.04728 * 0.02562 * 13 12 11 24 24 H 1.07993 * 119.91697 * 180.25725 * 14 13 12 25 25 H 1.08005 * 119.86433 * 179.69778 * 15 14 13 26 26 H 1.08005 * 119.95189 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.7065 1.3463 -0.0006 5 1 1.8877 2.3964 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0076 -1.2040 -0.0005 8 1 3.0875 -1.2040 -0.0001 9 7 1.3200 -2.3947 -0.0005 10 6 1.8586 -3.6492 -0.0015 11 6 0.8140 -4.5215 -0.0005 12 6 0.9227 -6.0014 -0.0005 13 6 2.1757 -6.6107 -0.0074 14 6 2.2714 -7.9874 -0.0015 15 6 1.1262 -8.7640 -0.0003 16 6 -0.1209 -8.1667 0.0007 17 6 -0.2295 -6.7884 0.0011 18 9 -1.4481 -6.2051 0.0016 19 7 -0.3310 -3.8209 0.0005 20 7 -0.0729 -2.5599 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 2.9090 -3.9004 -0.0021 23 1 3.0708 -6.0064 -0.0123 24 1 3.2425 -8.4599 -0.0026 25 1 1.2068 -9.8410 -0.0007 26 1 -1.0114 -8.7778 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = 46.242980 kcal Electronic energy + Delta-G solvation = -15210.280324 eV Core-core repulsion = 12397.424010 eV Total energy + Delta-G solvation = -2812.856314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.59907 -42.09501 -39.52144 -36.14486 -33.52831 -33.06478 -31.30019 -29.44796 -27.65293 -24.20346 -23.88879 -22.62537 -21.56117 -19.83218 -18.21596 -17.53296 -16.92451 -16.80018 -16.48119 -15.88673 -15.84583 -15.33881 -14.73869 -14.44229 -13.93393 -13.73834 -13.35269 -13.33691 -13.00189 -12.66325 -12.13866 -12.02896 -11.96379 -11.54242 -11.25238 -10.77922 -10.47311 -9.65175 -8.83998 -8.76009 -6.69827 0.15025 0.38324 1.05644 1.36172 1.58993 1.61333 2.02467 2.14303 2.66122 2.85540 3.01093 3.52452 3.77312 3.92573 4.17466 4.41236 4.47405 4.51547 4.72285 4.83189 5.00562 5.07379 5.27447 5.38649 5.54067 5.55490 5.82132 5.88865 6.11957 6.51755 7.08562 8.07993 8.24964 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.055717 B = 0.006247 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.418521 B = 4481.242915 C = 4973.818795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C -0.005 4.005 3 Si 1.033 2.967 4 H -0.234 1.234 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.155 0.845 9 N -0.160 5.160 10 C -0.110 4.110 11 C -0.054 4.054 12 C -0.039 4.039 13 C -0.095 4.095 14 C -0.114 4.114 15 C -0.095 4.095 16 C -0.154 4.154 17 C 0.061 3.939 18 F -0.153 7.153 19 N -0.342 5.342 20 N -0.151 5.151 21 H 0.289 0.711 22 H 0.205 0.795 23 H 0.147 0.853 24 H 0.171 0.829 25 H 0.172 0.828 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -10.715 -0.008 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.220 4.220 3 Si 0.850 3.150 4 H -0.156 1.156 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.172 0.828 9 N 0.071 4.929 10 C -0.264 4.264 11 C -0.200 4.200 12 C -0.042 4.042 13 C -0.115 4.115 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.173 4.173 17 C 0.041 3.959 18 F -0.132 7.132 19 N -0.200 5.200 20 N -0.127 5.127 21 H 0.100 0.900 22 H 0.222 0.778 23 H 0.164 0.836 24 H 0.188 0.812 25 H 0.190 0.810 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.626 -9.829 -0.007 12.440 hybrid contribution 0.297 0.795 0.002 0.848 sum 7.923 -9.034 -0.006 12.016 Atomic orbital electron populations 1.70320 1.09030 1.30774 1.33281 1.27249 0.96540 1.05187 0.92999 0.84346 0.79180 0.72856 0.78658 1.15594 1.19256 1.19246 1.21198 0.93956 0.80505 1.51688 0.82757 1.47017 1.06663 1.06211 1.33015 1.23155 1.00559 0.83715 1.18991 1.20044 0.89273 0.94139 1.16577 1.18332 0.94431 0.88329 1.03131 1.21283 0.94804 0.96267 0.99121 1.21534 1.00717 0.91972 0.98969 1.21462 0.90156 1.01958 0.97723 1.21352 1.01465 0.90610 1.03830 1.18323 0.79539 0.92480 1.05562 1.91467 1.42244 1.85549 1.93946 1.74333 1.26588 1.00604 1.18489 1.82475 0.90579 1.07798 1.31833 0.90046 0.77812 0.83560 0.81153 0.81013 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.32 11.87 21.67 0.26 -45.06 15 2 C 0.00 -0.22 5.50 84.97 0.47 0.24 15 3 Si 1.03 35.84 29.55 68.60 2.03 37.87 15 4 H -0.23 -7.09 7.11 99.48 0.71 -6.38 15 5 H -0.27 -9.12 7.11 99.48 0.71 -8.42 15 6 H -0.27 -9.12 7.11 99.48 0.71 -8.41 15 7 C -0.34 -17.27 10.30 83.99 0.87 -16.41 15 8 H 0.16 6.62 7.83 -2.91 -0.02 6.60 15 9 N -0.16 -9.04 3.77 -189.54 -0.71 -9.76 15 10 C -0.11 -5.33 10.92 83.46 0.91 -4.42 15 11 C -0.05 -2.78 6.89 40.98 0.28 -2.50 15 12 C -0.04 -1.60 5.88 -20.00 -0.12 -1.72 15 13 C -0.10 -2.78 9.55 22.48 0.21 -2.57 15 14 C -0.11 -2.37 10.03 22.24 0.22 -2.14 15 15 C -0.09 -1.92 10.04 22.31 0.22 -1.70 15 16 C -0.15 -4.31 10.02 22.28 0.22 -4.09 15 17 C 0.06 2.45 7.28 22.59 0.16 2.61 15 18 F -0.15 -7.29 15.75 44.97 0.71 -6.58 15 19 N -0.34 -20.76 10.96 -49.73 -0.54 -21.31 15 20 N -0.15 -9.65 11.69 37.02 0.43 -9.22 15 21 H 0.29 14.62 8.31 -92.71 -0.77 13.85 15 22 H 0.21 7.55 7.25 -2.91 -0.02 7.53 15 23 H 0.15 3.64 6.97 -2.91 -0.02 3.62 15 24 H 0.17 2.03 8.06 -2.91 -0.02 2.01 15 25 H 0.17 1.94 8.06 -2.91 -0.02 1.92 15 26 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -77.85 245.86 6.84 -71.01 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.22 Total: 15.73 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.46 Total: -32.69 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -0.57 Total: -85.34 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.71 Total: -6.58 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -77.85 6.84 -71.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.250 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds