Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48501 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47037 * 300.00272 * 3 2 1 6 6 H 1.48496 * 109.47107 * 60.00232 * 3 2 1 7 7 C 1.37874 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00076 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47440 * 180.02562 * 9 7 2 11 11 C 1.35898 * 117.00579 * 180.02562 * 10 9 7 12 12 C 1.38805 * 119.87141 * 0.02562 * 11 10 9 13 13 C 1.38294 * 119.77470 * 179.97438 * 12 11 10 14 14 C 1.37729 * 119.98459 * 359.97438 * 13 12 11 15 15 C 1.38955 * 120.89148 * 0.02562 * 14 13 12 16 16 C 1.38425 * 119.87465 * 179.97438 * 11 10 9 17 17 N 1.39546 * 110.22099 * 179.97438 * 15 14 13 18 18 C 1.34360 * 112.24876 * 359.97438 * 17 15 14 19 19 O 1.21286 * 126.43862 * 179.97438 * 18 17 15 20 20 C 1.51156 * 132.78090 * 179.97438 * 14 13 12 21 21 H 0.97004 * 119.99881 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47499 * 60.00189 * 9 7 2 23 23 H 1.08999 * 109.47531 * 300.00528 * 9 7 2 24 24 H 1.08001 * 120.11220 * 359.69669 * 12 11 10 25 25 H 1.07996 * 120.00983 * 179.97438 * 13 12 11 26 26 H 1.07995 * 119.95534 * 0.02617 * 16 11 10 27 27 H 0.96991 * 123.87203 * 179.97438 * 17 15 14 28 28 H 1.09000 * 110.50761 * 298.66640 * 20 14 13 29 29 H 1.08997 * 110.50997 * 61.23494 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.6603 -4.8411 -0.0011 12 6 0.2838 -5.0199 -0.0021 13 6 -0.2425 -6.2988 -0.0032 14 6 0.5986 -7.3893 -0.0038 15 6 1.9785 -7.2260 -0.0027 16 6 2.5060 -5.9370 -0.0016 17 7 2.6115 -8.4696 -0.0030 18 6 1.7339 -9.4871 -0.0036 19 8 2.0023 -10.6699 -0.0044 20 6 0.3472 -8.8798 -0.0045 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8896 24 1 -0.3739 -4.1633 0.0024 25 1 -1.3129 -6.4423 -0.0036 26 1 3.5762 -5.7922 -0.0012 27 1 3.5744 -8.5861 -0.0028 28 1 -0.1992 -9.1753 0.8912 29 1 -0.2008 -9.1743 -0.8995 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -47.424350 kcal Electronic energy + Delta-G solvation = -15182.154170 eV Core-core repulsion = 12456.403690 eV Total energy + Delta-G solvation = -2725.750480 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.30908 -39.01724 -37.34198 -34.81958 -33.00866 -31.78563 -29.58688 -28.04527 -26.64710 -23.51727 -22.17842 -21.37834 -20.72967 -17.96559 -17.13448 -16.69558 -16.02746 -15.77877 -15.15359 -14.69491 -14.61442 -14.31175 -14.03159 -13.45627 -12.97890 -12.70855 -12.34452 -12.09669 -11.67127 -11.21336 -11.05185 -10.78201 -10.68329 -10.32228 -10.21011 -9.99327 -9.34693 -8.68627 -8.16676 -7.56551 -6.31712 -4.35605 1.32861 1.64726 2.48100 2.93747 3.18884 3.26017 3.31575 3.98963 4.00720 4.21255 4.48040 4.56920 5.00062 5.05972 5.31284 5.34243 5.52615 5.61791 5.71702 5.94317 6.23073 6.42339 6.61605 6.66898 6.78353 6.86391 7.05376 7.12263 7.60851 7.86918 7.90722 8.33828 8.76334 9.30036 10.79441 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.076407 B = 0.004640 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.370215 B = 6032.939116 C = 6378.799813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.192 3.808 10 O -0.313 6.313 11 C 0.187 3.813 12 C -0.226 4.226 13 C -0.027 4.027 14 C -0.202 4.202 15 C 0.170 3.830 16 C -0.187 4.187 17 N -0.657 5.657 18 C 0.529 3.471 19 O -0.517 6.517 20 C -0.104 4.104 21 H 0.267 0.733 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.142 0.858 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.411 0.589 28 H 0.116 0.884 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -12.071 -0.001 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.090 0.910 9 C 0.119 3.881 10 O -0.225 6.225 11 C 0.138 3.862 12 C -0.245 4.245 13 C -0.045 4.045 14 C -0.205 4.205 15 C 0.073 3.927 16 C -0.209 4.209 17 N -0.300 5.300 18 C 0.318 3.682 19 O -0.393 6.393 20 C -0.143 4.143 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.159 0.841 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.249 0.751 28 H 0.134 0.866 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.034 -12.572 -0.001 12.572 hybrid contribution 0.615 1.015 0.002 1.187 sum 0.581 -11.557 0.001 11.571 Atomic orbital electron populations 1.69953 1.06118 1.27612 1.49474 1.24935 0.95066 0.99574 0.94602 0.86189 0.79970 0.82020 0.77821 1.19350 1.20632 1.20628 1.21003 0.94348 0.88656 1.52338 0.91041 1.20729 0.88622 0.81545 0.97158 1.86128 1.39333 1.11606 1.85419 1.18742 0.91114 0.86178 0.90183 1.21440 0.94759 0.98190 1.10144 1.19986 0.98964 0.90119 0.95476 1.19516 0.92637 0.94328 1.14020 1.17630 0.91636 0.85141 0.98302 1.19349 1.00033 0.87643 1.13873 1.43687 1.10324 1.05292 1.70656 1.20688 0.88483 0.84844 0.74194 1.90790 1.83758 1.14675 1.50075 1.20891 0.95625 0.92227 1.05602 0.92307 0.95754 0.95769 0.84063 0.85517 0.85214 0.75137 0.86591 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 13.29 55.43 0.74 -24.27 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.53 -14.45 9.43 -34.45 -0.32 -14.77 15 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15 9 C 0.19 4.82 4.49 36.00 0.16 4.98 15 10 O -0.31 -7.10 10.11 -19.42 -0.20 -7.30 15 11 C 0.19 3.51 6.67 -39.30 -0.26 3.25 15 12 C -0.23 -3.84 9.04 -39.35 -0.36 -4.19 15 13 C -0.03 -0.37 10.03 -39.75 -0.40 -0.77 15 14 C -0.20 -2.66 6.35 -104.32 -0.66 -3.32 15 15 C 0.17 2.37 7.11 -83.70 -0.59 1.77 15 16 C -0.19 -2.98 10.01 -39.13 -0.39 -3.37 15 17 N -0.66 -7.97 5.88 -9.71 -0.06 -8.02 15 18 C 0.53 6.84 8.71 -10.83 -0.09 6.74 15 19 O -0.52 -8.13 18.03 5.55 0.10 -8.03 15 20 C -0.10 -1.12 6.88 -28.47 -0.20 -1.31 15 21 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 22 H 0.02 0.63 7.66 -51.93 -0.40 0.23 15 23 H 0.02 0.63 7.65 -51.93 -0.40 0.23 15 24 H 0.14 2.52 6.29 -52.49 -0.33 2.19 15 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.41 4.11 8.96 -40.82 -0.37 3.75 15 28 H 0.12 1.04 8.14 -51.93 -0.42 0.62 15 29 H 0.12 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 261.42 15.07 3.94 3.94 Total: -1.00 -30.07 261.42 -6.44 -36.51 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.73 Total: 0.96 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.22 Total: -9.43 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.68 Total: -32.29 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.10 Total: -15.32 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.07 -6.44 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.914 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds