Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48501 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47037 * 300.00272 * 3 2 1 6 6 H 1.48496 * 109.47107 * 60.00232 * 3 2 1 7 7 C 1.37874 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00076 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47440 * 180.02562 * 9 7 2 11 11 C 1.35898 * 117.00579 * 180.02562 * 10 9 7 12 12 C 1.38805 * 119.87141 * 0.02562 * 11 10 9 13 13 C 1.38294 * 119.77470 * 179.97438 * 12 11 10 14 14 C 1.37729 * 119.98459 * 359.97438 * 13 12 11 15 15 C 1.38955 * 120.89148 * 0.02562 * 14 13 12 16 16 C 1.38425 * 119.87465 * 179.97438 * 11 10 9 17 17 N 1.39546 * 110.22099 * 179.97438 * 15 14 13 18 18 C 1.34360 * 112.24876 * 359.97438 * 17 15 14 19 19 O 1.21286 * 126.43862 * 179.97438 * 18 17 15 20 20 C 1.51156 * 132.78090 * 179.97438 * 14 13 12 21 21 H 0.97004 * 119.99881 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47499 * 60.00189 * 9 7 2 23 23 H 1.08999 * 109.47531 * 300.00528 * 9 7 2 24 24 H 1.08001 * 120.11220 * 359.69669 * 12 11 10 25 25 H 1.07996 * 120.00983 * 179.97438 * 13 12 11 26 26 H 1.07995 * 119.95534 * 0.02617 * 16 11 10 27 27 H 0.96991 * 123.87203 * 179.97438 * 17 15 14 28 28 H 1.09000 * 110.50761 * 298.66640 * 20 14 13 29 29 H 1.08997 * 110.50997 * 61.23494 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.6603 -4.8411 -0.0011 12 6 0.2838 -5.0199 -0.0021 13 6 -0.2425 -6.2988 -0.0032 14 6 0.5986 -7.3893 -0.0038 15 6 1.9785 -7.2260 -0.0027 16 6 2.5060 -5.9370 -0.0016 17 7 2.6115 -8.4696 -0.0030 18 6 1.7339 -9.4871 -0.0036 19 8 2.0023 -10.6699 -0.0044 20 6 0.3472 -8.8798 -0.0045 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8896 24 1 -0.3739 -4.1633 0.0024 25 1 -1.3129 -6.4423 -0.0036 26 1 3.5762 -5.7922 -0.0012 27 1 3.5744 -8.5861 -0.0028 28 1 -0.1992 -9.1753 0.8912 29 1 -0.2008 -9.1743 -0.8995 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -67.520851 kcal Electronic energy + Delta-G solvation = -15183.025620 eV Core-core repulsion = 12456.403690 eV Total energy + Delta-G solvation = -2726.621930 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41722 -40.42616 -38.65858 -36.09711 -35.00012 -32.96611 -30.79832 -29.82340 -27.99871 -25.29780 -23.51567 -22.47551 -21.97308 -19.27204 -18.88797 -18.07194 -17.18702 -17.06289 -16.87424 -16.40266 -16.04964 -15.64981 -15.18564 -14.64612 -14.34368 -14.08914 -13.65752 -13.46466 -13.07945 -12.91816 -12.90387 -12.34084 -12.24115 -11.91548 -11.38691 -11.35976 -11.28643 -10.69375 -9.42456 -8.87489 -8.38232 -6.51486 0.13683 0.41961 1.41305 1.41512 1.41779 1.56085 1.84384 2.30671 2.76090 2.76619 2.97042 3.23081 3.50598 3.89539 4.15038 4.28949 4.41385 4.57916 4.60041 4.80667 4.86513 5.01591 5.03055 5.30856 5.43541 5.47126 5.56128 5.73625 5.85615 5.92970 6.51157 6.79561 6.90365 7.20315 8.73833 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.076407 B = 0.004640 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.370215 B = 6032.939116 C = 6378.799813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.211 3.789 10 O -0.336 6.336 11 C 0.145 3.855 12 C -0.239 4.239 13 C -0.016 4.016 14 C -0.186 4.186 15 C 0.171 3.829 16 C -0.187 4.187 17 N -0.649 5.649 18 C 0.529 3.471 19 O -0.545 6.545 20 C -0.095 4.095 21 H 0.274 0.726 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.123 0.877 25 H 0.163 0.837 26 H 0.136 0.864 27 H 0.420 0.580 28 H 0.145 0.855 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -13.161 -0.003 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.083 0.917 9 C 0.138 3.862 10 O -0.249 6.249 11 C 0.098 3.902 12 C -0.259 4.259 13 C -0.035 4.035 14 C -0.189 4.189 15 C 0.074 3.926 16 C -0.209 4.209 17 N -0.292 5.292 18 C 0.319 3.681 19 O -0.423 6.423 20 C -0.134 4.134 21 H 0.083 0.917 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.141 0.859 25 H 0.181 0.819 26 H 0.154 0.846 27 H 0.259 0.741 28 H 0.162 0.838 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.396 -13.692 -0.003 13.697 hybrid contribution 0.708 1.157 0.003 1.356 sum 0.312 -12.535 0.000 12.539 Atomic orbital electron populations 1.70045 1.07573 1.28939 1.49584 1.25895 0.96008 1.03171 0.93588 0.85112 0.78629 0.77197 0.78350 1.18897 1.19605 1.19594 1.21351 0.94371 0.90297 1.53450 0.91670 1.20239 0.88334 0.82191 0.95437 1.86034 1.39005 1.12791 1.87095 1.19068 0.92534 0.85171 0.93436 1.21417 0.93843 0.99371 1.11241 1.20238 1.00885 0.88563 0.93779 1.19867 0.92008 0.95836 1.11206 1.17613 0.92387 0.84938 0.97684 1.19371 1.00195 0.87778 1.13510 1.43686 1.11083 1.04472 1.69964 1.21016 0.89357 0.84363 0.73358 1.90792 1.84253 1.15780 1.51479 1.21017 0.94679 0.89427 1.08257 0.91732 0.97453 0.97468 0.85902 0.81915 0.84564 0.74103 0.83761 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 13.29 21.45 0.28 -52.30 15 2 C 0.01 0.72 5.46 84.65 0.46 1.18 15 3 Si 0.98 42.46 29.54 68.60 2.03 44.49 15 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 15 7 C -0.56 -31.71 9.43 25.60 0.24 -31.46 15 8 H 0.07 3.68 7.81 -2.91 -0.02 3.66 15 9 C 0.21 11.22 4.49 71.23 0.32 11.54 15 10 O -0.34 -16.07 10.11 -92.40 -0.93 -17.00 15 11 C 0.15 5.62 6.67 22.45 0.15 5.77 15 12 C -0.24 -8.24 9.04 22.42 0.20 -8.04 15 13 C -0.02 -0.41 10.03 22.16 0.22 -0.19 15 14 C -0.19 -4.31 6.35 -19.67 -0.12 -4.43 15 15 C 0.17 4.44 7.11 38.33 0.27 4.72 15 16 C -0.19 -5.91 10.01 22.56 0.23 -5.68 15 17 N -0.65 -14.21 5.88 -303.25 -1.78 -15.99 15 18 C 0.53 12.03 8.71 87.94 0.77 12.79 15 19 O -0.55 -15.78 18.03 -3.05 -0.05 -15.84 15 20 C -0.10 -1.61 6.88 29.46 0.20 -1.41 15 21 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 22 H 0.01 0.42 7.66 -2.39 -0.02 0.40 15 23 H 0.01 0.41 7.65 -2.39 -0.02 0.39 15 24 H 0.12 4.64 6.29 -2.91 -0.02 4.62 15 25 H 0.16 2.90 8.06 -2.91 -0.02 2.87 15 26 H 0.14 3.99 8.06 -2.91 -0.02 3.97 15 27 H 0.42 7.61 8.96 -92.71 -0.83 6.78 15 28 H 0.14 1.80 8.14 -2.39 -0.02 1.78 15 29 H 0.15 1.80 8.14 -2.39 -0.02 1.78 15 Total: -1.00 -66.23 261.42 2.83 -63.39 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.36 Total: 8.47 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 2.94 Total: -15.22 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.50 Total: -68.28 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.99 Total: -32.84 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.23 2.83 -63.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.128 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds