Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34376 * 123.88836 * 2 1 4 4 O 1.21301 * 126.45361 * 359.97438 * 3 2 1 5 5 C 1.51382 * 107.09116 * 179.97438 * 3 2 1 6 6 C 1.51154 * 104.07528 * 0.02562 * 5 3 2 7 7 C 1.37792 * 132.80265 * 179.97438 * 6 5 3 8 8 C 1.38434 * 120.05535 * 179.97438 * 7 6 5 9 9 C 1.38205 * 119.89473 * 0.03075 * 8 7 6 10 10 C 1.38552 * 120.29614 * 359.97420 * 9 8 7 11 11 O 1.35774 * 120.00301 * 180.02562 * 10 9 8 12 12 C 1.34803 * 116.99938 * 354.37998 * 11 10 9 13 13 H 1.08003 * 120.00021 * 5.05546 * 12 11 10 14 14 C 1.38644 * 120.00154 * 185.06254 * 12 11 10 15 15 N 1.31567 * 120.00400 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99586 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46956 * 90.00742 * 16 14 12 18 18 H 1.48498 * 109.46906 * 210.00315 * 16 14 12 19 19 H 1.48497 * 109.47448 * 330.00757 * 16 14 12 20 20 C 1.38735 * 106.35152 * 0.02562 * 6 5 3 21 21 H 1.08994 * 109.47770 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47295 * 120.02445 * 1 2 3 23 23 H 1.09007 * 109.46989 * 240.01824 * 1 2 3 24 24 H 1.08995 * 110.51274 * 118.64930 * 5 3 2 25 25 H 1.08996 * 110.51399 * 241.35917 * 5 3 2 26 26 H 1.07997 * 119.97452 * 0.02562 * 7 6 5 27 27 H 1.07998 * 120.05622 * 180.02562 * 8 7 6 28 28 H 1.08006 * 119.85160 * 180.02562 * 9 8 7 29 29 H 0.96989 * 120.00126 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2142 1.1155 0.0000 4 8 1.8062 2.2578 -0.0004 5 6 3.6635 0.6780 0.0006 6 6 3.5917 -0.8318 0.0003 7 6 4.5571 -1.8150 0.0002 8 6 4.1878 -3.1492 0.0004 9 6 2.8494 -3.4935 0.0002 10 6 1.8744 -2.5091 0.0002 11 8 0.5612 -2.8540 0.0005 12 6 0.2730 -4.1656 -0.1169 13 1 1.0695 -4.8951 -0.1234 14 6 -1.0458 -4.5783 -0.2294 15 7 -1.3272 -5.8584 -0.3434 16 14 -2.4234 -3.3166 -0.2175 17 1 -2.7030 -2.8760 -1.6078 18 1 -3.6467 -3.9249 0.3644 19 1 -2.0156 -2.1460 0.6002 20 6 2.2434 -1.1587 -0.0010 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5136 0.8902 24 1 4.1709 1.0360 -0.8951 25 1 4.1702 1.0363 0.8967 26 1 5.6026 -1.5446 0.0007 27 1 4.9445 -3.9199 0.0008 28 1 2.5621 -4.5347 0.0008 29 1 -2.2498 -6.1471 -0.4217 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260284858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -19.991699 kcal Electronic energy + Delta-G solvation = -16106.090420 eV Core-core repulsion = 13381.529508 eV Total energy + Delta-G solvation = -2724.560911 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04161 -38.71005 -36.99111 -35.27783 -32.61345 -31.99657 -29.12512 -27.74587 -26.08567 -25.16922 -22.00853 -20.98099 -19.94094 -18.01728 -17.22432 -16.39320 -16.00463 -15.99557 -14.75610 -14.51371 -13.94828 -13.77434 -13.41514 -13.30527 -13.02330 -12.50414 -12.43241 -12.36591 -11.99482 -11.45784 -11.35686 -10.87183 -10.83026 -10.36681 -9.89069 -9.87575 -9.52339 -8.98630 -7.91947 -7.15861 -6.53057 -4.18881 1.65172 2.00686 2.82347 3.12063 3.16664 3.21028 3.26769 4.11362 4.28482 4.47787 4.56753 4.80336 4.96913 5.36612 5.50526 5.55308 5.61481 5.65337 5.82876 5.83222 6.09260 6.25562 6.35341 6.43995 6.88913 6.98101 7.08252 7.29310 7.44386 7.67721 7.89569 8.25964 8.81212 9.39077 10.54267 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.010158 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.675992 B = 2755.709076 C = 3776.545813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.535 5.535 3 C 0.518 3.482 4 O -0.530 6.530 5 C -0.108 4.108 6 C -0.102 4.102 7 C -0.155 4.155 8 C -0.087 4.087 9 C -0.197 4.197 10 C 0.153 3.847 11 O -0.215 6.215 12 C -0.390 4.390 13 H 0.108 0.892 14 C 0.066 3.934 15 N -0.875 5.875 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.257 1.257 20 C 0.062 3.938 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 7.011 0.568 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.258 5.258 3 C 0.307 3.693 4 O -0.408 6.408 5 C -0.147 4.147 6 C -0.105 4.105 7 C -0.174 4.174 8 C -0.106 4.106 9 C -0.217 4.217 10 C 0.100 3.900 11 O -0.120 6.120 12 C -0.465 4.465 13 H 0.126 0.874 14 C -0.138 4.138 15 N -0.512 5.512 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.181 1.181 20 C -0.033 4.033 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.790 7.626 0.566 10.226 hybrid contribution -0.797 0.041 -0.040 0.799 sum 5.993 7.667 0.526 9.746 Atomic orbital electron populations 1.21850 0.77572 1.02859 1.03638 1.45441 1.07193 1.05306 1.67855 1.20559 0.89037 0.83916 0.75755 1.90717 1.79210 1.19039 1.51825 1.20967 0.95360 0.93054 1.05348 1.19434 0.91838 0.93994 1.05243 1.19801 0.97527 0.91470 1.08603 1.20780 0.95357 0.95283 0.99132 1.21057 0.92062 1.00003 1.08592 1.18387 0.85191 0.89352 0.97098 1.83577 1.19206 1.28688 1.80522 1.20749 0.95193 0.78843 1.51721 0.87427 1.24442 0.97435 0.96386 0.95548 1.69633 1.20941 1.13733 1.46931 0.86308 0.80381 0.81551 0.79282 1.19774 1.20688 1.18094 1.17327 0.90055 0.84895 1.11025 0.90163 0.91139 0.90843 0.86535 0.86539 0.86552 0.86235 0.84029 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 9.87 59.85 0.59 2.09 15 2 N -0.54 -10.15 3.14 -120.46 -0.38 -10.52 15 3 C 0.52 9.15 8.24 -10.83 -0.09 9.06 15 4 O -0.53 -10.48 17.43 5.54 0.10 -10.39 15 5 C -0.11 -1.51 6.88 -28.48 -0.20 -1.70 15 6 C -0.10 -1.67 6.35 -104.38 -0.66 -2.33 15 7 C -0.15 -2.30 10.03 -39.67 -0.40 -2.70 15 8 C -0.09 -1.38 10.06 -39.52 -0.40 -1.78 15 9 C -0.20 -3.87 9.15 -39.48 -0.36 -4.23 15 10 C 0.15 3.32 6.68 -38.81 -0.26 3.06 15 11 O -0.21 -5.24 7.26 0.05 0.00 -5.24 15 12 C -0.39 -10.29 9.94 30.88 0.31 -9.99 15 13 H 0.11 2.89 5.43 -52.48 -0.28 2.60 15 14 C 0.07 1.75 5.49 -17.51 -0.10 1.66 15 15 N -0.88 -24.25 13.96 55.48 0.77 -23.47 15 16 Si 0.90 20.49 28.62 -169.99 -4.86 15.63 15 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 19 H -0.26 -5.68 6.88 56.52 0.39 -5.29 15 20 C 0.06 1.20 6.71 -83.49 -0.56 0.64 15 21 H 0.08 1.32 7.57 -51.93 -0.39 0.93 15 22 H 0.07 1.31 8.08 -51.93 -0.42 0.89 15 23 H 0.07 1.38 7.86 -51.93 -0.41 0.97 15 24 H 0.12 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.12 1.35 8.14 -51.93 -0.42 0.93 15 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.14 2.89 5.61 -52.48 -0.29 2.60 15 29 H 0.28 7.21 8.31 -40.82 -0.34 6.88 15 LS Contribution 256.15 15.07 3.86 3.86 Total: -1.00 -29.15 256.15 -5.27 -34.43 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.64 Total: 1.91 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.12 Total: -6.21 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.40 Total: -33.99 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.10 Total: -15.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.86 Total: 15.63 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.15 -5.27 -34.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.434 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds