Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34376 * 123.88836 * 2 1 4 4 O 1.21301 * 126.45361 * 359.97438 * 3 2 1 5 5 C 1.51382 * 107.09116 * 179.97438 * 3 2 1 6 6 C 1.51154 * 104.07528 * 0.02562 * 5 3 2 7 7 C 1.37792 * 132.80265 * 179.97438 * 6 5 3 8 8 C 1.38434 * 120.05535 * 179.97438 * 7 6 5 9 9 C 1.38205 * 119.89473 * 0.03075 * 8 7 6 10 10 C 1.38552 * 120.29614 * 359.97420 * 9 8 7 11 11 O 1.35774 * 120.00301 * 180.02562 * 10 9 8 12 12 C 1.34803 * 116.99938 * 354.37998 * 11 10 9 13 13 H 1.08003 * 120.00021 * 5.05546 * 12 11 10 14 14 C 1.38644 * 120.00154 * 185.06254 * 12 11 10 15 15 N 1.31567 * 120.00400 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99586 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46956 * 90.00742 * 16 14 12 18 18 H 1.48498 * 109.46906 * 210.00315 * 16 14 12 19 19 H 1.48497 * 109.47448 * 330.00757 * 16 14 12 20 20 C 1.38735 * 106.35152 * 0.02562 * 6 5 3 21 21 H 1.08994 * 109.47770 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47295 * 120.02445 * 1 2 3 23 23 H 1.09007 * 109.46989 * 240.01824 * 1 2 3 24 24 H 1.08995 * 110.51274 * 118.64930 * 5 3 2 25 25 H 1.08996 * 110.51399 * 241.35917 * 5 3 2 26 26 H 1.07997 * 119.97452 * 0.02562 * 7 6 5 27 27 H 1.07998 * 120.05622 * 180.02562 * 8 7 6 28 28 H 1.08006 * 119.85160 * 180.02562 * 9 8 7 29 29 H 0.96989 * 120.00126 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2142 1.1155 0.0000 4 8 1.8062 2.2578 -0.0004 5 6 3.6635 0.6780 0.0006 6 6 3.5917 -0.8318 0.0003 7 6 4.5571 -1.8150 0.0002 8 6 4.1878 -3.1492 0.0004 9 6 2.8494 -3.4935 0.0002 10 6 1.8744 -2.5091 0.0002 11 8 0.5612 -2.8540 0.0005 12 6 0.2730 -4.1656 -0.1169 13 1 1.0695 -4.8951 -0.1234 14 6 -1.0458 -4.5783 -0.2294 15 7 -1.3272 -5.8584 -0.3434 16 14 -2.4234 -3.3166 -0.2175 17 1 -2.7030 -2.8760 -1.6078 18 1 -3.6467 -3.9249 0.3644 19 1 -2.0156 -2.1460 0.6002 20 6 2.2434 -1.1587 -0.0010 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5136 0.8902 24 1 4.1709 1.0360 -0.8951 25 1 4.1702 1.0363 0.8967 26 1 5.6026 -1.5446 0.0007 27 1 4.9445 -3.9199 0.0008 28 1 2.5621 -4.5347 0.0008 29 1 -2.2498 -6.1471 -0.4217 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260284858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -38.333143 kcal Electronic energy + Delta-G solvation = -16106.885764 eV Core-core repulsion = 13381.529508 eV Total energy + Delta-G solvation = -2725.356256 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.44890 -40.28932 -38.52317 -36.71036 -34.50377 -33.40499 -30.61798 -29.16088 -27.49924 -26.98124 -23.40233 -22.52830 -21.35601 -19.79032 -18.81548 -17.85185 -17.52979 -17.37634 -16.36095 -16.00087 -15.61786 -15.40348 -14.77211 -14.63278 -14.63143 -14.12197 -14.03997 -13.81825 -13.41747 -13.02417 -12.84409 -12.45768 -12.19059 -12.07927 -11.55893 -11.32138 -11.09688 -10.91633 -9.34801 -8.68329 -8.50348 -6.20155 0.26655 0.57810 1.29530 1.31596 1.45124 1.47727 1.82707 2.24541 2.75045 2.94333 3.09182 3.24707 3.50620 3.97382 4.12801 4.30161 4.33200 4.39576 4.58131 4.58476 4.66016 4.84451 4.98432 5.05239 5.44351 5.56699 5.63045 5.71434 5.86540 5.97647 6.23709 6.84332 6.86824 7.56065 8.60844 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.010158 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.675992 B = 2755.709076 C = 3776.545813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.547 5.547 3 C 0.511 3.489 4 O -0.555 6.555 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.124 4.124 8 C -0.082 4.082 9 C -0.211 4.211 10 C 0.113 3.887 11 O -0.240 6.240 12 C -0.392 4.392 13 H 0.087 0.913 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.252 1.252 20 C 0.044 3.956 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.169 0.831 27 H 0.156 0.844 28 H 0.120 0.880 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 9.245 0.650 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.270 5.270 3 C 0.303 3.697 4 O -0.435 6.435 5 C -0.131 4.131 6 C -0.098 4.098 7 C -0.142 4.142 8 C -0.101 4.101 9 C -0.231 4.231 10 C 0.062 3.938 11 O -0.148 6.148 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.777 3.223 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.176 1.176 20 C -0.050 4.050 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.170 0.830 25 H 0.170 0.830 26 H 0.186 0.814 27 H 0.174 0.826 28 H 0.138 0.862 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.834 9.884 0.653 13.958 hybrid contribution -1.380 -0.532 -0.059 1.480 sum 8.455 9.352 0.593 12.621 Atomic orbital electron populations 1.21787 0.78168 1.03398 1.02547 1.45685 1.07348 1.05831 1.68127 1.21262 0.90623 0.83130 0.74661 1.90709 1.80022 1.19845 1.52906 1.21084 0.92744 0.90691 1.08552 1.19933 0.90365 0.95956 1.03514 1.20392 0.99715 0.90155 1.03946 1.21210 0.94123 0.97270 0.97475 1.21151 0.93881 0.98792 1.09254 1.18911 0.84681 0.91019 0.99143 1.83535 1.21048 1.26940 1.83286 1.20696 0.94949 0.79843 1.51344 0.89521 1.25149 0.99549 0.98011 0.95781 1.69716 1.21460 1.15253 1.49835 0.85475 0.77888 0.79520 0.79409 1.19396 1.19823 1.17628 1.17643 0.91837 0.84196 1.11370 0.88668 0.92217 0.92056 0.83047 0.83008 0.81361 0.82635 0.86176 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.05 9.87 127.77 1.26 4.31 15 2 N -0.55 -20.07 3.14 -653.64 -2.05 -22.12 15 3 C 0.51 16.62 8.24 87.94 0.72 17.35 15 4 O -0.55 -20.69 17.43 -3.09 -0.05 -20.75 15 5 C -0.09 -2.06 6.88 29.46 0.20 -1.86 15 6 C -0.09 -2.66 6.35 -19.71 -0.13 -2.78 15 7 C -0.12 -2.94 10.03 22.21 0.22 -2.72 15 8 C -0.08 -2.32 10.06 22.31 0.22 -2.10 15 9 C -0.21 -8.27 9.15 22.34 0.20 -8.06 15 10 C 0.11 4.96 6.68 22.77 0.15 5.11 15 11 O -0.24 -12.23 7.26 -22.74 -0.17 -12.40 15 12 C -0.39 -21.88 9.94 67.92 0.68 -21.20 15 13 H 0.09 5.02 5.43 -2.91 -0.02 5.00 15 14 C 0.01 0.76 5.49 84.83 0.47 1.23 15 15 N -0.92 -53.64 13.96 21.61 0.30 -53.34 15 16 Si 0.95 43.80 28.62 68.60 1.96 45.77 15 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 19 H -0.25 -11.21 6.88 99.48 0.68 -10.52 15 20 C 0.04 1.66 6.71 38.45 0.26 1.92 15 21 H 0.09 3.11 7.57 -2.39 -0.02 3.09 15 22 H 0.06 2.28 8.08 -2.39 -0.02 2.26 15 23 H 0.06 2.36 7.86 -2.38 -0.02 2.34 15 24 H 0.15 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.15 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.17 2.45 8.06 -2.91 -0.02 2.42 15 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.12 5.18 5.61 -2.91 -0.02 5.16 15 29 H 0.28 15.25 8.31 -92.72 -0.77 14.48 15 Total: -1.00 -67.21 256.15 5.42 -61.79 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.15 Total: 9.84 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 4.27 Total: -8.81 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -1.75 Total: -75.45 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.22 Total: -33.14 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.96 Total: 45.77 kcal Total: -67.21 5.42 -61.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.462 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds