Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39539 * 123.87601 * 2 1 4 4 C 1.39450 * 130.78516 * 0.02562 * 3 2 1 5 5 C 1.37997 * 120.28075 * 179.97438 * 4 3 2 6 6 C 1.38168 * 120.45290 * 359.97438 * 5 4 3 7 7 C 1.39047 * 119.74395 * 359.73896 * 6 5 4 8 8 O 1.35753 * 120.11450 * 180.02562 * 7 6 5 9 9 C 1.34832 * 116.99466 * 354.40214 * 8 7 6 10 10 H 1.07997 * 120.00419 * 5.06527 * 9 8 7 11 11 C 1.38652 * 119.99967 * 185.05772 * 9 8 7 12 12 N 1.31563 * 119.99636 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00348 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47079 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47400 * 119.99975 * 13 11 9 16 16 H 1.48503 * 109.47097 * 240.00045 * 13 11 9 17 17 C 1.38312 * 119.77465 * 0.49978 * 7 6 5 18 18 C 1.51124 * 132.85895 * 179.82661 * 17 7 6 19 19 C 1.34380 * 123.87351 * 179.97438 * 2 1 3 20 20 O 1.21280 * 126.45760 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47080 * 90.00172 * 1 2 3 22 22 H 1.08999 * 109.47227 * 210.00017 * 1 2 3 23 23 H 1.09003 * 109.47116 * 329.99773 * 1 2 3 24 24 H 1.08002 * 119.85921 * 359.97273 * 4 3 2 25 25 H 1.08002 * 119.77525 * 179.97438 * 5 4 3 26 26 H 1.07997 * 120.12634 * 179.97438 * 6 5 4 27 27 H 0.97006 * 119.99685 * 180.02562 * 12 11 9 28 28 H 1.08998 * 110.51586 * 298.36798 * 18 17 7 29 29 H 1.08999 * 110.50609 * 61.07777 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2428 1.1585 0.0000 4 6 1.8740 2.5033 0.0005 5 6 2.8391 3.4896 0.0009 6 6 4.1802 3.1571 0.0014 7 6 4.5592 1.8193 0.0070 8 8 5.8747 1.4840 0.0080 9 6 6.7630 2.4910 -0.1137 10 1 6.4203 3.5151 -0.1240 11 6 8.1165 2.2117 -0.2256 12 7 8.5338 0.9641 -0.2134 13 14 9.3473 3.6067 -0.3935 14 1 8.6279 4.9058 -0.3809 15 1 10.3059 3.5602 0.7396 16 1 10.0865 3.4633 -1.6735 17 6 3.5913 0.8312 0.0015 18 6 3.6634 -0.6783 0.0017 19 6 2.2140 -1.1157 0.0005 20 8 1.8058 -2.2578 0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 0.8284 2.7741 0.0005 25 1 2.5443 4.5286 0.0008 26 1 4.9311 3.9332 0.0013 27 1 9.4808 0.7687 -0.2913 28 1 4.1711 -1.0367 -0.8938 29 1 4.1699 -1.0363 0.8980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260330086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -22.185828 kcal Electronic energy + Delta-G solvation = -15762.814624 eV Core-core repulsion = 13038.158568 eV Total energy + Delta-G solvation = -2724.656056 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97406 -38.61945 -36.95369 -34.91385 -32.62585 -32.12196 -28.71481 -27.58074 -26.23380 -25.26679 -21.83062 -21.05199 -19.97244 -17.95124 -17.13523 -16.16056 -15.95723 -15.79072 -14.91400 -14.30633 -14.03775 -13.78432 -13.50136 -13.34285 -12.97983 -12.46195 -12.14683 -12.12395 -11.78719 -11.48468 -11.39549 -11.08215 -10.69459 -10.49004 -9.84747 -9.77451 -9.43262 -8.91076 -7.64852 -7.24597 -6.53466 -4.13141 1.79258 2.16150 2.87305 3.04801 3.09167 3.10846 3.15531 3.89638 4.40498 4.60253 4.93042 5.02070 5.19942 5.31086 5.39870 5.48860 5.61957 5.79095 5.96826 5.99521 6.05997 6.10733 6.46292 6.68257 6.91505 7.03546 7.13793 7.24939 7.28593 7.69082 7.90064 8.23480 8.91709 9.57860 10.63840 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.007044 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.236748 B = 3973.927903 C = 4670.475785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.553 5.553 3 C 0.177 3.823 4 C -0.226 4.226 5 C -0.043 4.043 6 C -0.246 4.246 7 C 0.198 3.802 8 O -0.169 6.169 9 C -0.394 4.394 10 H 0.095 0.905 11 C 0.041 3.959 12 N -0.858 5.858 13 Si 0.942 3.058 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.275 1.275 17 C -0.215 4.215 18 C -0.093 4.093 19 C 0.526 3.474 20 O -0.522 6.522 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 3.667 0.229 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.276 5.276 3 C 0.082 3.918 4 C -0.247 4.247 5 C -0.062 4.062 6 C -0.266 4.266 7 C 0.142 3.858 8 O -0.071 6.071 9 C -0.470 4.470 10 H 0.113 0.887 11 C -0.164 4.164 12 N -0.492 5.492 13 Si 0.767 3.233 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.219 4.219 18 C -0.132 4.132 19 C 0.317 3.683 20 O -0.399 6.399 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.127 0.873 25 H 0.135 0.865 26 H 0.152 0.848 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.808 2.612 0.234 10.153 hybrid contribution 0.473 0.847 -0.092 0.975 sum -9.335 3.459 0.142 9.956 Atomic orbital electron populations 1.21715 0.78393 1.03486 1.02373 1.45702 1.06776 1.06036 1.69125 1.17716 0.89106 0.86875 0.98144 1.19769 0.98888 0.89019 1.17054 1.20461 0.92121 0.97773 0.95880 1.21102 0.96371 0.95781 1.13387 1.18323 0.84915 0.91004 0.91518 1.83980 1.09957 1.35819 1.77343 1.21417 0.86158 0.87064 1.52387 0.88726 1.25315 0.96890 0.97892 0.96304 1.70048 1.16103 1.17818 1.45197 0.85625 0.79743 0.79604 0.78337 1.19003 1.20105 1.20101 1.18561 0.91227 0.93630 1.18528 1.20728 0.93404 0.93342 1.05772 1.20917 0.89505 0.83679 0.74223 1.90706 1.79446 1.19130 1.50570 0.92055 0.90371 0.90506 0.87300 0.86505 0.84837 0.91905 0.86673 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.77 59.85 0.64 1.66 15 2 N -0.55 -9.26 3.13 -120.63 -0.38 -9.63 15 3 C 0.18 3.19 6.69 -83.70 -0.56 2.63 15 4 C -0.23 -3.67 9.73 -39.22 -0.38 -4.05 15 5 C -0.04 -0.73 10.01 -39.70 -0.40 -1.12 15 6 C -0.25 -4.95 9.18 -39.31 -0.36 -5.31 15 7 C 0.20 4.52 6.63 -39.25 -0.26 4.26 15 8 O -0.17 -4.54 9.76 0.03 0.00 -4.54 15 9 C -0.39 -10.43 9.49 30.89 0.29 -10.14 15 10 H 0.10 2.29 5.21 -52.49 -0.27 2.02 15 11 C 0.04 1.08 5.49 -17.51 -0.10 0.98 15 12 N -0.86 -24.18 13.67 55.48 0.76 -23.42 15 13 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 15 14 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 17 C -0.22 -4.44 6.29 -104.19 -0.66 -5.09 15 18 C -0.09 -1.78 6.88 -28.49 -0.20 -1.98 15 19 C 0.53 9.76 8.23 -10.82 -0.09 9.67 15 20 O -0.52 -10.63 17.67 5.56 0.10 -10.53 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.08 0.93 7.95 -51.93 -0.41 0.52 15 23 H 0.08 0.79 7.61 -51.93 -0.40 0.39 15 24 H 0.11 1.45 7.69 -52.49 -0.40 1.05 15 25 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.13 2.65 5.66 -52.49 -0.30 2.35 15 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 28 H 0.12 2.16 8.14 -51.93 -0.42 1.74 15 29 H 0.11 2.13 8.14 -51.93 -0.42 1.70 15 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -30.35 259.42 -5.30 -35.65 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -2.61 Total: 2.43 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.06 Total: -8.49 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.38 Total: -33.06 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.10 Total: -15.07 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.35 -5.30 -35.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.463 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds