Wall clock time and date at job start Mon Mar 30 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39539 * 123.87601 * 2 1 4 4 C 1.39450 * 130.78516 * 0.02562 * 3 2 1 5 5 C 1.37997 * 120.28075 * 179.97438 * 4 3 2 6 6 C 1.38168 * 120.45290 * 359.97438 * 5 4 3 7 7 C 1.39047 * 119.74395 * 359.73896 * 6 5 4 8 8 O 1.35753 * 120.11450 * 180.02562 * 7 6 5 9 9 C 1.34832 * 116.99466 * 354.40214 * 8 7 6 10 10 H 1.07997 * 120.00419 * 5.06527 * 9 8 7 11 11 C 1.38652 * 119.99967 * 185.05772 * 9 8 7 12 12 N 1.31563 * 119.99636 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00348 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47079 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47400 * 119.99975 * 13 11 9 16 16 H 1.48503 * 109.47097 * 240.00045 * 13 11 9 17 17 C 1.38312 * 119.77465 * 0.49978 * 7 6 5 18 18 C 1.51124 * 132.85895 * 179.82661 * 17 7 6 19 19 C 1.34380 * 123.87351 * 179.97438 * 2 1 3 20 20 O 1.21280 * 126.45760 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47080 * 90.00172 * 1 2 3 22 22 H 1.08999 * 109.47227 * 210.00017 * 1 2 3 23 23 H 1.09003 * 109.47116 * 329.99773 * 1 2 3 24 24 H 1.08002 * 119.85921 * 359.97273 * 4 3 2 25 25 H 1.08002 * 119.77525 * 179.97438 * 5 4 3 26 26 H 1.07997 * 120.12634 * 179.97438 * 6 5 4 27 27 H 0.97006 * 119.99685 * 180.02562 * 12 11 9 28 28 H 1.08998 * 110.51586 * 298.36798 * 18 17 7 29 29 H 1.08999 * 110.50609 * 61.07777 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2428 1.1585 0.0000 4 6 1.8740 2.5033 0.0005 5 6 2.8391 3.4896 0.0009 6 6 4.1802 3.1571 0.0014 7 6 4.5592 1.8193 0.0070 8 8 5.8747 1.4840 0.0080 9 6 6.7630 2.4910 -0.1137 10 1 6.4203 3.5151 -0.1240 11 6 8.1165 2.2117 -0.2256 12 7 8.5338 0.9641 -0.2134 13 14 9.3473 3.6067 -0.3935 14 1 8.6279 4.9058 -0.3809 15 1 10.3059 3.5602 0.7396 16 1 10.0865 3.4633 -1.6735 17 6 3.5913 0.8312 0.0015 18 6 3.6634 -0.6783 0.0017 19 6 2.2140 -1.1157 0.0005 20 8 1.8058 -2.2578 0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 0.8284 2.7741 0.0005 25 1 2.5443 4.5286 0.0008 26 1 4.9311 3.9332 0.0013 27 1 9.4808 0.7687 -0.2913 28 1 4.1711 -1.0367 -0.8938 29 1 4.1699 -1.0363 0.8980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260330086.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:03 Heat of formation + Delta-G solvation = -41.641350 kcal Electronic energy + Delta-G solvation = -15763.658279 eV Core-core repulsion = 13038.158568 eV Total energy + Delta-G solvation = -2725.499711 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.45126 -40.27391 -38.56726 -36.40659 -34.34403 -33.69142 -30.21896 -29.10424 -27.54102 -27.07073 -23.38993 -22.55931 -21.49305 -19.63703 -18.73906 -17.67193 -17.39626 -17.37486 -16.44552 -15.90174 -15.69732 -15.49889 -14.98696 -14.57228 -14.45892 -13.89544 -13.76459 -13.53711 -13.24306 -13.01055 -12.94593 -12.64454 -12.16464 -12.03625 -11.49161 -11.20637 -11.08292 -10.72981 -9.22124 -8.77094 -8.44513 -6.12809 0.26383 0.65601 1.37076 1.39596 1.48955 1.57391 1.72805 2.20093 2.82705 3.10738 3.16178 3.38781 3.71652 4.16049 4.18460 4.40723 4.43113 4.46976 4.51512 4.55896 4.66480 4.75824 4.99768 5.13033 5.19881 5.56947 5.63311 5.69247 5.77479 6.02846 6.21058 6.79863 7.00465 7.78265 8.78180 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.007044 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.236748 B = 3973.927903 C = 4670.475785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.547 5.547 3 C 0.175 3.825 4 C -0.196 4.196 5 C -0.033 4.033 6 C -0.256 4.256 7 C 0.163 3.837 8 O -0.223 6.223 9 C -0.411 4.411 10 H 0.109 0.891 11 C -0.022 4.022 12 N -0.919 5.919 13 Si 1.018 2.982 14 H -0.247 1.247 15 H -0.272 1.272 16 H -0.272 1.272 17 C -0.237 4.237 18 C -0.099 4.099 19 C 0.530 3.470 20 O -0.542 6.542 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.157 0.843 25 H 0.164 0.836 26 H 0.131 0.869 27 H 0.272 0.728 28 H 0.108 0.892 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 6.231 0.173 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.269 5.269 3 C 0.079 3.921 4 C -0.217 4.217 5 C -0.051 4.051 6 C -0.276 4.276 7 C 0.111 3.889 8 O -0.129 6.129 9 C -0.487 4.487 10 H 0.126 0.874 11 C -0.219 4.219 12 N -0.557 5.557 13 Si 0.837 3.163 14 H -0.170 1.170 15 H -0.197 1.197 16 H -0.198 1.198 17 C -0.241 4.241 18 C -0.138 4.138 19 C 0.321 3.679 20 O -0.420 6.420 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.126 0.874 24 H 0.175 0.825 25 H 0.182 0.818 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.769 5.208 0.181 13.792 hybrid contribution 0.995 0.061 -0.062 0.999 sum -11.774 5.269 0.119 12.900 Atomic orbital electron populations 1.22103 0.75154 1.05279 1.04125 1.45738 1.08549 1.04687 1.67892 1.17964 0.88062 0.88227 0.97800 1.20358 1.01259 0.87514 1.12555 1.20962 0.90288 1.00342 0.93529 1.21298 0.98365 0.94415 1.13483 1.18883 0.84122 0.92993 0.92929 1.83955 1.11719 1.36725 1.80459 1.21926 0.86769 0.87794 1.52227 0.87388 1.26565 0.98812 1.00661 0.95898 1.70199 1.16463 1.20467 1.48534 0.84532 0.76804 0.76713 0.78227 1.16962 1.19719 1.19765 1.18845 0.92536 0.93937 1.18811 1.20733 0.94575 0.93247 1.05290 1.20622 0.89211 0.83900 0.74213 1.90694 1.79615 1.19935 1.51800 0.90289 0.90034 0.87407 0.82497 0.81835 0.85166 0.91937 0.87425 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 10.77 127.77 1.38 2.87 15 2 N -0.55 -16.81 3.13 -654.16 -2.05 -18.86 15 3 C 0.18 5.84 6.69 38.33 0.26 6.09 15 4 C -0.20 -5.31 9.73 22.50 0.22 -5.09 15 5 C -0.03 -0.94 10.01 22.20 0.22 -0.72 15 6 C -0.26 -9.95 9.18 22.45 0.21 -9.74 15 7 C 0.16 7.60 6.63 22.48 0.15 7.75 15 8 O -0.22 -12.71 9.76 -22.80 -0.22 -12.93 15 9 C -0.41 -22.67 9.49 67.92 0.64 -22.02 15 10 H 0.11 5.35 5.21 -2.91 -0.02 5.33 15 11 C -0.02 -1.18 5.49 84.83 0.47 -0.71 15 12 N -0.92 -54.90 13.67 21.61 0.30 -54.60 15 13 Si 1.02 41.17 29.55 68.60 2.03 43.20 15 14 H -0.25 -9.02 7.11 99.48 0.71 -8.31 15 15 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 16 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 17 C -0.24 -9.85 6.29 -19.59 -0.12 -9.97 15 18 C -0.10 -3.94 6.88 29.46 0.20 -3.73 15 19 C 0.53 19.40 8.23 87.94 0.72 20.12 15 20 O -0.54 -21.86 17.67 -3.03 -0.05 -21.92 15 21 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.08 1.65 7.95 -2.39 -0.02 1.64 15 23 H 0.11 1.55 7.61 -2.39 -0.02 1.53 15 24 H 0.16 2.89 7.69 -2.91 -0.02 2.86 15 25 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.13 5.07 5.66 -2.91 -0.02 5.05 15 27 H 0.27 14.92 8.31 -92.70 -0.77 14.15 15 28 H 0.11 4.34 8.14 -2.39 -0.02 4.32 15 29 H 0.11 4.35 8.14 -2.39 -0.02 4.33 15 Total: -1.00 -70.29 259.42 5.52 -64.78 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.18 Total: 15.50 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.34 Total: -15.16 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.75 Total: -73.46 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.28 Total: -34.85 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -70.29 5.52 -64.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330086.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.134 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds