Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35912 * 116.99919 * 2 1 4 4 C 1.39005 * 120.07776 * 359.97281 * 3 2 1 5 5 C 1.38264 * 120.13672 * 180.02562 * 4 3 2 6 6 C 1.37988 * 120.39818 * 0.27276 * 5 4 3 7 7 C 1.39674 * 119.93138 * 359.46435 * 6 5 4 8 8 C 1.38012 * 120.07274 * 179.97438 * 3 2 1 9 9 C 1.50809 * 133.28110 * 359.95494 * 8 3 2 10 10 N 1.46737 * 106.23267 * 180.02562 * 9 8 3 11 11 C 1.36864 * 125.62965 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00318 * 174.36260 * 11 10 9 13 13 C 1.39046 * 120.00046 * 354.36531 * 11 10 9 14 14 N 1.31362 * 120.00011 * 6.95695 * 13 11 10 15 15 Si 1.86807 * 120.00163 * 186.95997 * 13 11 10 16 16 H 1.48492 * 109.47256 * 59.99746 * 15 13 11 17 17 H 1.48506 * 109.46853 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46913 * 299.99595 * 15 13 11 19 19 C 1.34421 * 108.74497 * 359.97438 * 10 9 8 20 20 O 1.21592 * 124.84101 * 180.02562 * 19 10 9 21 21 H 1.08999 * 109.47123 * 300.00296 * 1 2 3 22 22 H 1.08999 * 109.46765 * 60.00512 * 1 2 3 23 23 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.93495 * 0.04606 * 4 3 2 25 25 H 1.08002 * 119.80382 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.03619 * 179.69538 * 6 5 4 27 27 H 1.09004 * 110.10261 * 60.82566 * 9 8 3 28 28 H 1.09006 * 110.15487 * 299.24071 * 9 8 3 29 29 H 0.97005 * 120.00674 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2906 2.3778 -0.0006 5 6 1.9170 3.6104 -0.0011 6 6 3.2943 3.6936 -0.0067 7 6 4.0630 2.5275 -0.0006 8 6 3.4242 1.2850 0.0005 9 6 4.5155 0.2441 0.0020 10 7 5.7847 0.9805 0.0025 11 6 7.0326 0.4184 0.0043 12 1 7.9073 1.0452 -0.0874 13 6 7.1742 -0.9596 0.1241 14 7 6.1132 -1.7337 0.0981 15 14 8.8733 -1.7103 0.3223 16 1 9.5102 -1.1759 1.5526 17 1 8.7529 -3.1867 0.4277 18 1 9.7074 -1.3651 -0.8568 19 6 5.5195 2.2983 0.0009 20 8 6.3609 3.1762 0.0003 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2121 2.3215 -0.0003 25 1 1.3247 4.5135 -0.0020 26 1 3.7775 4.6595 -0.0121 27 1 4.4426 -0.3764 -0.8911 28 1 4.4419 -0.3759 0.8955 29 1 6.2119 -2.6950 0.1820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354932.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -46.457697 kcal Electronic energy + Delta-G solvation = -15983.357001 eV Core-core repulsion = 13257.648438 eV Total energy + Delta-G solvation = -2725.708563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99304 -40.18115 -37.83991 -37.03363 -34.60953 -32.07887 -31.09420 -28.49334 -27.48685 -27.04899 -23.79509 -22.61868 -21.20992 -19.39684 -18.42523 -17.83947 -16.93296 -16.91611 -16.48562 -16.22820 -16.18607 -15.79499 -14.68359 -14.46293 -13.99503 -13.98277 -13.56832 -13.44371 -13.07168 -12.86225 -12.61374 -12.51723 -12.14998 -11.92748 -11.79094 -11.37315 -10.59314 -10.15163 -9.83295 -9.12042 -8.55766 -6.09649 -0.11625 0.43285 1.37349 1.39629 1.50806 1.96595 2.16077 2.41567 2.74955 2.85574 3.14982 3.34303 3.77828 4.06533 4.26243 4.40095 4.50951 4.51436 4.54484 4.70697 4.82021 4.82704 5.06816 5.18569 5.27776 5.38502 5.43533 5.70964 5.78275 6.28905 6.49550 6.93439 7.05358 7.86356 8.49970 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.030551 B = 0.008601 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.283982 B = 3254.795538 C = 4147.406755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.143 3.857 4 C -0.181 4.181 5 C -0.072 4.072 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.160 4.160 9 C 0.190 3.810 10 N -0.435 5.435 11 C -0.341 4.341 12 H 0.091 0.909 13 C -0.001 4.001 14 N -0.887 5.887 15 Si 1.010 2.990 16 H -0.268 1.268 17 H -0.262 1.262 18 H -0.265 1.265 19 C 0.440 3.560 20 O -0.639 6.639 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.178 0.822 25 H 0.178 0.822 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 1.101 0.183 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.097 3.903 4 C -0.200 4.200 5 C -0.089 4.089 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.163 4.163 9 C 0.067 3.933 10 N -0.149 5.149 11 C -0.467 4.467 12 H 0.109 0.891 13 C -0.205 4.205 14 N -0.524 5.524 15 Si 0.831 3.169 16 H -0.193 1.193 17 H -0.186 1.186 18 H -0.190 1.190 19 C 0.232 3.768 20 O -0.531 6.531 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.133 0.867 24 H 0.195 0.805 25 H 0.195 0.805 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.067 0.963 0.187 14.101 hybrid contribution 0.981 -0.425 0.031 1.070 sum -13.086 0.538 0.218 13.099 Atomic orbital electron populations 1.23432 0.75940 1.05666 1.02843 1.86145 1.23985 1.26405 1.88563 1.18190 0.88698 0.86165 0.97237 1.21688 1.01563 0.90447 1.06272 1.21256 0.92351 0.98945 0.96394 1.20941 0.94446 0.96274 1.01643 1.20415 0.93219 0.95143 1.03561 1.20186 0.92984 0.95990 1.07168 1.19997 0.79199 0.91205 1.02893 1.43990 1.06507 1.05525 1.58830 1.19789 0.83169 0.92214 1.51520 0.89138 1.26373 1.04339 0.95278 0.94482 1.69971 1.30937 1.06308 1.45164 0.84759 0.75464 0.77349 0.79355 1.19311 1.18559 1.19012 1.18615 0.89071 0.83016 0.86099 1.90507 1.53914 1.47628 1.61037 0.90902 0.90886 0.86731 0.80468 0.80466 0.85151 0.90283 0.89924 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 15 2 O -0.34 -10.54 10.49 -92.56 -0.97 -11.51 15 3 C 0.14 4.90 6.67 22.40 0.15 5.05 15 4 C -0.18 -4.52 9.05 22.46 0.20 -4.31 15 5 C -0.07 -1.83 10.01 22.22 0.22 -1.61 15 6 C -0.11 -4.09 10.10 22.56 0.23 -3.86 15 7 C -0.12 -5.63 6.26 -20.15 -0.13 -5.75 15 8 C -0.16 -7.11 6.31 -19.53 -0.12 -7.23 15 9 C 0.19 9.88 5.41 85.62 0.46 10.34 15 10 N -0.44 -25.62 3.07 -643.10 -1.98 -27.60 15 11 C -0.34 -20.38 9.98 84.10 0.84 -19.55 15 12 H 0.09 5.58 7.75 -2.91 -0.02 5.56 15 13 C 0.00 -0.08 5.48 84.96 0.47 0.39 15 14 N -0.89 -47.46 10.37 21.68 0.22 -47.24 15 15 Si 1.01 42.03 29.56 68.60 2.03 44.06 15 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 18 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 19 C 0.44 25.67 7.91 86.72 0.69 26.36 15 20 O -0.64 -41.04 17.70 -4.01 -0.07 -41.11 15 21 H 0.07 0.98 7.66 -2.39 -0.02 0.97 15 22 H 0.07 0.99 7.66 -2.39 -0.02 0.97 15 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.18 2.68 6.30 -2.91 -0.02 2.66 15 25 H 0.18 2.73 8.06 -2.91 -0.02 2.71 15 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 27 H 0.08 4.27 7.60 -2.39 -0.02 4.25 15 28 H 0.08 4.47 7.35 -2.38 -0.02 4.45 15 29 H 0.28 13.96 8.31 -92.70 -0.77 13.19 15 Total: -1.00 -75.74 256.40 4.53 -71.22 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.17 Total: 10.99 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.12 Total: 1.20 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.75 Total: -74.84 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -1.04 Total: -52.62 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.74 4.53 -71.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354932.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.758 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds