Wall clock time and date at job start Mon Mar 30 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30597 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48498 * 109.47416 * 239.99993 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99578 * 3 2 1 7 7 C 1.40225 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 180.02562 * 7 2 1 9 9 C 1.41260 * 119.99923 * 359.72663 * 7 2 1 10 10 N 1.30631 * 123.22626 * 180.02562 * 9 7 2 11 11 C 1.47579 * 108.34085 * 179.37507 * 10 9 7 12 12 H 1.09000 * 110.90645 * 103.20787 * 11 10 9 13 13 C 1.50699 * 110.90557 * 226.81032 * 11 10 9 14 14 C 1.38267 * 119.94383 * 38.26346 * 13 11 10 15 15 C 1.38148 * 120.05694 * 179.72861 * 14 13 11 16 16 C 1.38735 * 119.93938 * 0.53016 * 15 14 13 17 17 O 1.35905 * 120.05268 * 179.72475 * 16 15 14 18 18 C 1.38726 * 119.88946 * 359.74474 * 16 15 14 19 19 C 1.38143 * 119.94768 * 0.02562 * 18 16 15 20 20 C 1.54791 * 102.10438 * 345.00841 * 11 10 9 21 21 O 1.35195 * 123.22171 * 359.70615 * 9 7 2 22 22 H 0.97000 * 120.00265 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.97016 * 359.97438 * 14 13 11 24 24 H 1.07997 * 120.02964 * 180.29970 * 15 14 13 25 25 H 0.96694 * 114.00057 * 270.01883 * 17 16 15 26 26 H 1.08004 * 120.02604 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.97106 * 179.97438 * 19 18 16 28 28 H 1.09002 * 111.01450 * 141.73266 * 20 11 10 29 29 H 1.09003 * 111.01814 * 265.57034 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0938 1.6964 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0937 1.6963 1.2126 7 6 2.0071 -1.2144 -0.0005 8 1 3.0871 -1.2144 -0.0001 9 6 1.3008 -2.4377 0.0047 10 7 1.8892 -3.6040 0.0051 11 6 0.8479 -4.6495 0.0265 12 1 0.7249 -5.0963 -0.9601 13 6 1.1650 -5.7032 1.0562 14 6 1.7199 -5.3382 2.2689 15 6 2.0063 -6.3016 3.2167 16 6 1.7467 -7.6374 2.9466 17 8 2.0328 -8.5876 3.8752 18 6 1.1952 -8.0016 1.7269 19 6 0.9063 -7.0339 0.7842 20 6 -0.4116 -3.8450 0.4293 21 8 -0.0490 -2.5137 0.0163 22 1 -0.4850 0.8400 -0.0004 23 1 1.9259 -4.2986 2.4769 24 1 2.4352 -6.0155 4.1657 25 1 2.9260 -8.9510 3.8038 26 1 0.9927 -9.0409 1.5141 27 1 0.4773 -7.3171 -0.1656 28 1 -1.2905 -4.1990 -0.1096 29 1 -0.5736 -3.8857 1.5065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356078.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:06 Heat of formation + Delta-G solvation = -63.359272 kcal Electronic energy + Delta-G solvation = -15550.666900 eV Core-core repulsion = 12824.225429 eV Total energy + Delta-G solvation = -2726.441470 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48999 -40.32783 -37.71852 -35.49364 -33.89828 -32.08132 -31.85084 -29.39286 -27.50603 -24.41248 -23.66958 -22.28081 -21.36437 -19.32609 -19.27782 -17.52630 -17.07590 -16.76816 -16.22875 -16.06553 -15.82339 -15.27926 -14.70382 -14.36238 -14.02201 -13.67329 -13.25748 -13.14424 -12.93433 -12.73959 -12.66240 -12.41656 -12.00079 -11.86128 -11.36850 -11.08290 -10.29018 -9.92817 -9.68873 -9.31436 -8.69605 -6.85390 0.27648 0.41255 1.33361 1.41942 1.56428 1.98120 2.21844 2.65601 3.10601 3.29232 3.32877 3.92690 3.94182 4.04834 4.12457 4.25170 4.38936 4.48491 4.57223 4.88391 4.91844 4.97017 5.14028 5.16322 5.35869 5.43903 5.76153 5.80770 5.91268 6.19911 6.60037 6.77153 6.87629 7.88228 8.32599 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.049375 B = 0.005812 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.956623 B = 4816.804711 C = 5112.414890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.037 3.963 3 Si 1.004 2.996 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.388 3.612 10 N -0.710 5.710 11 C 0.076 3.924 12 H 0.067 0.933 13 C -0.078 4.078 14 C -0.094 4.094 15 C -0.153 4.153 16 C 0.097 3.903 17 O -0.505 6.505 18 C -0.141 4.141 19 C -0.103 4.103 20 C 0.019 3.981 21 O -0.338 6.338 22 H 0.293 0.707 23 H 0.096 0.904 24 H 0.137 0.863 25 H 0.409 0.591 26 H 0.156 0.844 27 H 0.144 0.856 28 H 0.109 0.891 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -9.136 3.696 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.183 4.183 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.522 4.522 8 H 0.117 0.883 9 C 0.191 3.809 10 N -0.462 5.462 11 C -0.035 4.035 12 H 0.085 0.915 13 C -0.078 4.078 14 C -0.112 4.112 15 C -0.171 4.171 16 C 0.052 3.948 17 O -0.318 6.318 18 C -0.159 4.159 19 C -0.121 4.121 20 C -0.058 4.058 21 O -0.243 6.243 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.155 0.845 25 H 0.268 0.732 26 H 0.174 0.826 27 H 0.162 0.838 28 H 0.127 0.873 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.984 -9.215 3.818 10.023 hybrid contribution -0.149 0.675 -0.156 0.708 sum 0.835 -8.540 3.663 9.329 Atomic orbital electron populations 1.69797 1.09153 1.31198 1.33177 1.27079 0.95786 1.05163 0.90290 0.84937 0.78406 0.74012 0.80400 1.17976 1.18681 1.18045 1.19175 0.94817 0.87546 1.50647 0.88305 1.22299 0.78893 0.94800 0.84893 1.75615 1.25835 0.96806 1.47952 1.22022 0.90674 0.94811 0.95983 0.91530 1.19876 0.98987 0.94428 0.94550 1.20788 0.97929 0.98937 0.93567 1.21506 1.02720 0.92813 1.00063 1.18440 0.99805 0.87582 0.88942 1.84751 1.38899 1.54970 1.53141 1.21566 1.01174 1.00923 0.92272 1.21119 0.99742 0.90937 1.00350 1.24435 0.99333 0.82505 0.99559 1.87255 1.23607 1.31173 1.82301 0.89675 0.88580 0.84525 0.73181 0.82641 0.83837 0.87311 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.05 11.82 21.87 0.26 -42.79 15 2 C 0.04 1.88 5.50 85.36 0.47 2.35 15 3 Si 1.00 37.88 29.56 68.60 2.03 39.91 15 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 7 C -0.48 -27.29 9.47 23.50 0.22 -27.07 15 8 H 0.10 5.41 7.85 -2.91 -0.02 5.39 15 9 C 0.39 22.44 7.38 85.61 0.63 23.08 15 10 N -0.71 -38.84 10.75 -439.48 -4.73 -43.57 15 11 C 0.08 3.47 3.96 44.65 0.18 3.64 15 12 H 0.07 2.90 8.05 -2.39 -0.02 2.88 15 13 C -0.08 -3.03 5.01 -19.85 -0.10 -3.13 15 14 C -0.09 -3.69 9.18 22.25 0.20 -3.48 15 15 C -0.15 -4.90 9.99 22.37 0.22 -4.67 15 16 C 0.10 2.69 6.70 22.51 0.15 2.84 15 17 O -0.50 -11.28 13.50 -92.48 -1.25 -12.53 15 18 C -0.14 -3.73 9.99 22.36 0.22 -3.50 15 19 C -0.10 -3.17 9.68 22.25 0.22 -2.95 15 20 C 0.02 0.88 7.67 72.59 0.56 1.43 15 21 O -0.34 -19.00 9.18 -84.76 -0.78 -19.78 15 22 H 0.29 13.91 8.29 -92.71 -0.77 13.14 15 23 H 0.10 4.35 7.72 -2.91 -0.02 4.33 15 24 H 0.14 3.85 8.06 -2.91 -0.02 3.83 15 25 H 0.41 4.90 9.06 -74.06 -0.67 4.23 15 26 H 0.16 3.07 8.06 -2.91 -0.02 3.04 15 27 H 0.14 3.70 8.05 -2.91 -0.02 3.68 15 28 H 0.11 4.19 8.14 -2.39 -0.02 4.17 15 29 H 0.06 2.50 7.79 -2.39 -0.02 2.48 15 Total: -1.00 -67.82 261.72 -0.98 -68.80 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.51 Total: 21.41 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 2.98 Total: -11.46 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -4.47 Total: -86.36 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -2.03 Total: -32.31 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -67.82 -0.98 -68.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356078.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.442 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds