Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48502 * 109.47077 * 275.29176 * 3 2 1 5 5 H 1.48505 * 109.47069 * 35.29073 * 3 2 1 6 6 H 1.48500 * 109.47076 * 155.29133 * 3 2 1 7 7 C 1.39042 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00246 * 337.69012 * 7 2 1 9 9 N 1.36877 * 120.00015 * 157.68810 * 7 2 1 10 10 C 1.46136 * 119.49876 * 136.16566 * 9 7 2 11 11 C 1.52660 * 110.96194 * 139.54862 * 10 9 7 12 12 C 1.50593 * 110.13932 * 50.46238 * 11 10 9 13 13 C 1.38326 * 120.67976 * 147.57296 * 12 11 10 14 14 O 1.35908 * 120.07576 * 359.11110 * 13 12 11 15 15 C 1.38910 * 119.85249 * 179.08606 * 13 12 11 16 16 C 1.38298 * 120.36779 * 0.02636 * 15 13 12 17 17 C 1.38064 * 120.24525 * 0.28261 * 16 15 13 18 18 C 1.39407 * 119.71817 * 359.92753 * 17 16 15 19 19 C 1.34677 * 119.49886 * 316.14944 * 9 7 2 20 20 O 1.21588 * 120.35526 * 7.96888 * 19 9 7 21 21 H 0.97003 * 120.00380 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.17788 * 259.92514 * 10 9 7 23 23 H 1.08992 * 109.18274 * 19.16552 * 10 9 7 24 24 H 1.08990 * 109.35975 * 170.67222 * 11 10 9 25 25 H 1.09000 * 109.35683 * 290.26223 * 11 10 9 26 26 H 0.96694 * 114.00438 * 89.99410 * 14 13 12 27 27 H 1.08007 * 119.81781 * 180.02562 * 15 13 12 28 28 H 1.08005 * 119.87738 * 180.26915 * 16 15 13 29 29 H 1.07999 * 120.14239 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3833 2.1110 -1.3941 5 1 1.5054 2.6178 0.8089 6 1 3.5966 1.4105 0.5852 7 6 2.0089 -1.2041 0.0005 8 1 1.5295 -2.1043 0.3560 9 7 3.3008 -1.2487 -0.4495 10 6 4.2993 -2.0048 0.3034 11 6 5.2309 -2.7659 -0.6365 12 6 5.7710 -1.8393 -1.6936 13 6 7.0400 -2.0238 -2.2125 14 8 7.8213 -3.0382 -1.7567 15 6 7.5137 -1.1703 -3.2007 16 6 6.7239 -0.1360 -3.6689 17 6 5.4584 0.0608 -3.1533 18 6 4.9776 -0.7890 -2.1583 19 6 3.6323 -0.5954 -1.5795 20 8 2.8327 0.1456 -2.1180 21 1 -0.4851 0.8400 -0.0004 22 1 4.8873 -1.3162 0.9102 23 1 3.7929 -2.7144 0.9576 24 1 6.0593 -3.1832 -0.0643 25 1 4.6796 -3.5761 -1.1137 26 1 7.7159 -3.8659 -2.2454 27 1 8.5045 -1.3151 -3.6057 28 1 7.0986 0.5202 -4.4405 29 1 4.8431 0.8692 -3.5199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260373825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -36.671077 kcal Electronic energy + Delta-G solvation = -16380.614301 eV Core-core repulsion = 13655.330118 eV Total energy + Delta-G solvation = -2725.284183 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29018 -38.41781 -36.26650 -35.32048 -32.92591 -31.27254 -29.86572 -28.40737 -25.39184 -23.54152 -22.47116 -21.22074 -19.18910 -18.12014 -17.16101 -16.34013 -15.87823 -15.36671 -14.89241 -14.46930 -14.23184 -13.71685 -13.27142 -13.07071 -12.66723 -12.35092 -12.15601 -12.07832 -11.48749 -11.23430 -10.99209 -10.76186 -10.43837 -10.21802 -9.93381 -8.74434 -8.58602 -8.39183 -8.35138 -7.65209 -6.25697 -3.99719 1.18679 1.42798 3.26878 3.50114 3.57328 3.67224 4.17184 4.34184 4.44696 4.61951 4.86557 5.02777 5.19371 5.24533 5.37988 5.56184 5.64689 5.73793 5.81865 5.98412 6.20629 6.23575 6.41138 6.51436 6.58674 6.72461 6.93255 7.69306 7.78363 7.95733 8.72197 8.85273 9.36047 9.77031 10.78637 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037119 B = 0.009954 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.159606 B = 2812.140535 C = 3297.081747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.096 3.904 3 Si 0.914 3.086 4 H -0.253 1.253 5 H -0.307 1.307 6 H -0.282 1.282 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.451 5.451 10 C 0.110 3.890 11 C -0.095 4.095 12 C -0.084 4.084 13 C 0.093 3.907 14 O -0.496 6.496 15 C -0.138 4.138 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.090 4.090 19 C 0.481 3.519 20 O -0.540 6.540 21 H 0.274 0.726 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.385 0.615 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.441 -4.602 -3.920 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.115 4.115 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.236 1.236 6 H -0.208 1.208 7 C -0.482 4.482 8 H 0.115 0.885 9 N -0.172 5.172 10 C -0.014 4.014 11 C -0.133 4.133 12 C -0.085 4.085 13 C 0.049 3.951 14 O -0.305 6.305 15 C -0.157 4.157 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.094 4.094 19 C 0.272 3.728 20 O -0.424 6.424 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.240 0.760 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.020 -3.766 -3.727 14.988 hybrid contribution 0.338 0.364 -0.285 0.573 sum 14.358 -3.402 -4.012 15.291 Atomic orbital electron populations 1.69754 1.07004 1.28486 1.43768 1.25371 0.94890 0.99656 0.91555 0.86334 0.79029 0.81917 0.78263 1.17854 1.23615 1.20760 1.18878 0.85382 0.96605 1.47353 0.88507 1.43349 1.09051 1.45219 1.19562 1.21436 0.90435 0.95637 0.93881 1.20731 0.99446 0.97288 0.95827 1.20386 0.92683 0.97226 0.98248 1.18066 0.89300 0.91967 0.95780 1.84804 1.63897 1.21991 1.59800 1.21407 1.00349 0.96940 0.96976 1.20952 0.94098 0.98091 1.00479 1.21269 0.95211 0.98525 0.94933 1.20187 0.95498 0.95912 0.97758 1.18044 0.86839 0.85973 0.81992 1.90596 1.51499 1.38065 1.62231 0.91623 0.92971 0.89607 0.89110 0.90028 0.75975 0.85635 0.85479 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.28 13.95 55.50 0.77 -25.51 15 2 C 0.10 2.87 4.76 -17.45 -0.08 2.79 15 3 Si 0.91 24.95 25.01 -169.99 -4.25 20.70 15 4 H -0.25 -7.17 6.26 56.52 0.35 -6.82 15 5 H -0.31 -8.08 7.11 56.52 0.40 -7.68 15 6 H -0.28 -7.54 7.11 56.52 0.40 -7.14 15 7 C -0.36 -10.21 9.57 -15.00 -0.14 -10.35 15 8 H 0.10 2.83 8.06 -52.48 -0.42 2.40 15 9 N -0.45 -11.31 2.43 -116.42 -0.28 -11.59 15 10 C 0.11 2.11 6.39 -4.41 -0.03 2.09 15 11 C -0.10 -1.51 5.86 -28.11 -0.16 -1.68 15 12 C -0.08 -1.46 5.71 -104.14 -0.59 -2.05 15 13 C 0.09 1.36 6.68 -39.30 -0.26 1.10 15 14 O -0.50 -5.92 12.55 -19.45 -0.24 -6.16 15 15 C -0.14 -1.84 9.98 -39.31 -0.39 -2.23 15 16 C -0.12 -1.67 10.03 -39.62 -0.40 -2.06 15 17 C -0.08 -1.45 9.63 -39.21 -0.38 -1.82 15 18 C -0.09 -1.85 5.79 -105.08 -0.61 -2.46 15 19 C 0.48 12.24 6.07 -12.43 -0.08 12.16 15 20 O -0.54 -15.64 11.72 5.29 0.06 -15.57 15 21 H 0.27 7.89 8.31 -40.82 -0.34 7.55 15 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.09 1.51 7.92 -51.93 -0.41 1.10 15 24 H 0.09 1.20 7.48 -51.93 -0.39 0.81 15 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.39 2.74 9.06 45.56 0.41 3.15 15 27 H 0.13 1.32 8.06 -52.48 -0.42 0.90 15 28 H 0.13 1.39 8.06 -52.48 -0.42 0.96 15 29 H 0.13 2.46 7.78 -52.49 -0.41 2.05 15 LS Contribution 247.60 15.07 3.73 3.73 Total: -1.00 -34.84 247.60 -5.43 -40.27 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -2.09 Total: -1.34 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.13 Total: -4.53 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.49 Total: -37.10 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.18 Total: -21.74 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.25 Total: 20.70 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -34.84 -5.43 -40.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.602 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds