Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48502 * 109.47077 * 275.29176 * 3 2 1 5 5 H 1.48505 * 109.47069 * 35.29073 * 3 2 1 6 6 H 1.48500 * 109.47076 * 155.29133 * 3 2 1 7 7 C 1.39042 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00246 * 337.69012 * 7 2 1 9 9 N 1.36877 * 120.00015 * 157.68810 * 7 2 1 10 10 C 1.46136 * 119.49876 * 136.16566 * 9 7 2 11 11 C 1.52660 * 110.96194 * 139.54862 * 10 9 7 12 12 C 1.50593 * 110.13932 * 50.46238 * 11 10 9 13 13 C 1.38326 * 120.67976 * 147.57296 * 12 11 10 14 14 O 1.35908 * 120.07576 * 359.11110 * 13 12 11 15 15 C 1.38910 * 119.85249 * 179.08606 * 13 12 11 16 16 C 1.38298 * 120.36779 * 0.02636 * 15 13 12 17 17 C 1.38064 * 120.24525 * 0.28261 * 16 15 13 18 18 C 1.39407 * 119.71817 * 359.92753 * 17 16 15 19 19 C 1.34677 * 119.49886 * 316.14944 * 9 7 2 20 20 O 1.21588 * 120.35526 * 7.96888 * 19 9 7 21 21 H 0.97003 * 120.00380 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.17788 * 259.92514 * 10 9 7 23 23 H 1.08992 * 109.18274 * 19.16552 * 10 9 7 24 24 H 1.08990 * 109.35975 * 170.67222 * 11 10 9 25 25 H 1.09000 * 109.35683 * 290.26223 * 11 10 9 26 26 H 0.96694 * 114.00438 * 89.99410 * 14 13 12 27 27 H 1.08007 * 119.81781 * 180.02562 * 15 13 12 28 28 H 1.08005 * 119.87738 * 180.26915 * 16 15 13 29 29 H 1.07999 * 120.14239 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3833 2.1110 -1.3941 5 1 1.5054 2.6178 0.8089 6 1 3.5966 1.4105 0.5852 7 6 2.0089 -1.2041 0.0005 8 1 1.5295 -2.1043 0.3560 9 7 3.3008 -1.2487 -0.4495 10 6 4.2993 -2.0048 0.3034 11 6 5.2309 -2.7659 -0.6365 12 6 5.7710 -1.8393 -1.6936 13 6 7.0400 -2.0238 -2.2125 14 8 7.8213 -3.0382 -1.7567 15 6 7.5137 -1.1703 -3.2007 16 6 6.7239 -0.1360 -3.6689 17 6 5.4584 0.0608 -3.1533 18 6 4.9776 -0.7890 -2.1583 19 6 3.6323 -0.5954 -1.5795 20 8 2.8327 0.1456 -2.1180 21 1 -0.4851 0.8400 -0.0004 22 1 4.8873 -1.3162 0.9102 23 1 3.7929 -2.7144 0.9576 24 1 6.0593 -3.1832 -0.0643 25 1 4.6796 -3.5761 -1.1137 26 1 7.7159 -3.8659 -2.2454 27 1 8.5045 -1.3151 -3.6057 28 1 7.0986 0.5202 -4.4405 29 1 4.8431 0.8692 -3.5199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260373825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = -63.350336 kcal Electronic energy + Delta-G solvation = -16381.771200 eV Core-core repulsion = 13655.330118 eV Total energy + Delta-G solvation = -2726.441083 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77421 -39.92646 -37.42679 -37.11196 -34.84872 -33.04877 -31.19265 -29.78802 -27.29930 -24.97437 -24.07574 -22.53854 -20.86762 -19.62962 -18.74029 -17.79759 -17.50133 -16.80696 -16.51748 -15.96156 -15.81222 -15.37437 -14.88194 -14.87258 -14.51344 -13.81693 -13.76714 -13.38978 -12.98461 -12.81860 -12.57599 -12.36261 -12.22132 -12.07224 -11.55101 -10.85049 -10.49217 -9.89326 -9.64881 -9.55534 -8.52082 -6.25227 -0.14672 0.24810 1.18951 1.30685 1.43681 1.94329 2.37553 2.54935 2.78436 3.01408 3.27440 3.66983 3.77101 3.90392 4.09157 4.29953 4.40393 4.41492 4.62217 4.80017 4.82077 4.93761 5.10379 5.32046 5.36041 5.43235 5.62769 5.78072 5.82157 6.67289 6.78440 6.89084 7.22123 7.76504 8.56319 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.037119 B = 0.009954 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.159606 B = 2812.140535 C = 3297.081747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.053 3.947 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.469 5.469 10 C 0.102 3.898 11 C -0.085 4.085 12 C -0.092 4.092 13 C 0.108 3.892 14 O -0.492 6.492 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.477 3.523 20 O -0.589 6.589 21 H 0.276 0.724 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.088 0.912 26 H 0.412 0.588 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.735 -5.735 -4.679 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.154 4.154 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.097 0.903 9 N -0.190 5.190 10 C -0.020 4.020 11 C -0.122 4.122 12 C -0.094 4.094 13 C 0.064 3.936 14 O -0.306 6.306 15 C -0.135 4.135 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.135 4.135 19 C 0.269 3.731 20 O -0.476 6.476 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.115 0.885 24 H 0.145 0.855 25 H 0.106 0.894 26 H 0.271 0.729 27 H 0.186 0.814 28 H 0.182 0.818 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.348 -4.943 -4.464 19.520 hybrid contribution -0.785 0.572 -0.171 0.986 sum 17.564 -4.371 -4.635 18.684 Atomic orbital electron populations 1.69819 1.07936 1.28993 1.46737 1.25960 0.95395 1.02011 0.91987 0.85575 0.78559 0.79933 0.76875 1.20388 1.22335 1.20086 1.18861 0.87565 0.95679 1.46560 0.90347 1.43566 1.08922 1.46192 1.20290 1.21674 0.90003 0.95769 0.94557 1.20718 0.99658 0.96593 0.95267 1.20524 0.93716 0.96441 0.98709 1.18033 0.87954 0.92686 0.94968 1.84756 1.62676 1.22747 1.60376 1.21900 1.01536 0.94929 0.95154 1.21302 0.92062 0.98516 1.00386 1.21327 0.97067 0.98234 0.95062 1.19897 0.93905 0.99341 1.00310 1.18953 0.88548 0.84063 0.81519 1.90539 1.53608 1.40012 1.63396 0.91488 0.92525 0.88518 0.85484 0.89351 0.72914 0.81412 0.81751 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.61 13.95 21.68 0.30 -57.30 15 2 C 0.05 3.26 4.76 84.96 0.40 3.67 15 3 Si 0.96 53.47 25.01 68.60 1.72 55.19 15 4 H -0.28 -16.33 6.26 99.48 0.62 -15.71 15 5 H -0.29 -15.48 7.11 99.48 0.71 -14.77 15 6 H -0.28 -14.75 7.11 99.48 0.71 -14.05 15 7 C -0.36 -21.38 9.57 84.10 0.80 -20.58 15 8 H 0.08 4.81 8.06 -2.91 -0.02 4.78 15 9 N -0.47 -23.92 2.43 -640.57 -1.56 -25.48 15 10 C 0.10 3.83 6.39 86.34 0.55 4.39 15 11 C -0.09 -2.45 5.86 29.70 0.17 -2.27 15 12 C -0.09 -2.93 5.71 -19.55 -0.11 -3.04 15 13 C 0.11 2.58 6.68 22.45 0.15 2.73 15 14 O -0.49 -8.63 12.55 -92.51 -1.16 -9.79 15 15 C -0.12 -2.40 9.98 22.45 0.22 -2.18 15 16 C -0.10 -2.51 10.03 22.24 0.22 -2.28 15 17 C -0.10 -3.40 9.63 22.51 0.22 -3.19 15 18 C -0.13 -5.31 5.79 -20.16 -0.12 -5.43 15 19 C 0.48 24.84 6.07 86.77 0.53 25.36 15 20 O -0.59 -35.60 11.72 -3.99 -0.05 -35.64 15 21 H 0.28 16.61 8.31 -92.71 -0.77 15.84 15 22 H 0.06 2.06 8.14 -2.38 -0.02 2.04 15 23 H 0.10 3.33 7.92 -2.39 -0.02 3.32 15 24 H 0.13 2.74 7.48 -2.39 -0.02 2.72 15 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.41 3.13 9.06 -74.06 -0.67 2.46 15 27 H 0.17 2.16 8.06 -2.91 -0.02 2.14 15 28 H 0.16 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.12 4.36 7.78 -2.91 -0.02 4.34 15 Total: -1.00 -80.39 247.60 2.72 -77.66 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 0.43 Total: -1.83 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 3.05 Total: -2.81 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.26 Total: -82.78 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.21 Total: -45.43 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.72 Total: 55.19 kcal Total: -80.39 2.72 -77.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.312 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds