Wall clock time and date at job start Mon Mar 30 2020 03:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35748 * 116.99967 * 2 1 4 4 C 1.38745 * 119.86357 * 0.25192 * 3 2 1 5 5 C 1.38375 * 120.03611 * 180.25579 * 4 3 2 6 6 O 1.35709 * 120.11552 * 179.77105 * 5 4 3 7 7 C 1.40336 * 119.76940 * 359.74785 * 5 4 3 8 8 C 1.43198 * 120.13791 * 180.02562 * 7 5 4 9 9 N 6.70053 * 117.14849 * 359.86038 * 2 1 3 10 10 C 1.39796 * 119.72481 * 359.97438 * 7 5 4 11 11 C 1.37656 * 119.95431 * 0.02562 * 10 7 5 12 12 C 1.50706 * 119.88232 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47294 * 265.00573 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 H 1.08998 * 109.47141 * 300.00328 * 1 2 3 22 22 H 1.08997 * 109.46836 * 60.00223 * 1 2 3 23 23 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.97974 * 0.02562 * 4 3 2 25 25 H 0.96698 * 114.00086 * 269.97251 * 6 5 4 26 26 H 1.07995 * 120.02223 * 180.02562 * 10 7 5 27 27 H 1.09001 * 109.46953 * 25.00015 * 12 11 10 28 28 H 1.09000 * 109.47318 * 144.99613 * 12 11 10 29 29 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2869 2.3713 0.0053 5 6 1.9114 3.6061 0.0000 6 8 1.1711 4.7435 0.0004 7 6 3.3129 3.6782 -0.0054 8 6 3.9673 4.9519 -0.0104 9 7 4.4865 5.9623 -0.0145 10 6 4.0675 2.5014 -0.0049 11 6 3.4345 1.2790 0.0005 12 6 4.2495 0.0114 0.0005 13 6 4.4119 -0.4815 -1.4143 14 1 3.9688 0.0680 -2.2317 15 6 5.1252 -1.6345 -1.6651 16 7 5.6643 -2.3038 -0.6696 17 14 5.3259 -2.2458 -3.4187 18 1 6.0200 -1.2115 -4.2272 19 1 6.1291 -3.4949 -3.4187 20 1 3.9884 -2.5169 -4.0045 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2086 2.3118 0.0098 25 1 0.9533 5.0714 -0.8828 26 1 5.1463 2.5512 -0.0086 27 1 5.2310 0.2106 0.4307 28 1 3.7402 -0.7481 0.5938 29 1 6.1664 -3.1147 -0.8460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260376002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:14 Heat of formation + Delta-G solvation = -32.751600 kcal Electronic energy + Delta-G solvation = -15514.120453 eV Core-core repulsion = 12789.006231 eV Total energy + Delta-G solvation = -2725.114222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19640 -38.31152 -36.47194 -35.80532 -33.22196 -30.95555 -30.31230 -27.48791 -26.61649 -23.39650 -22.87709 -21.29991 -18.82667 -17.86458 -16.75747 -16.39482 -16.21550 -15.33827 -14.75433 -14.43257 -14.07788 -13.81159 -13.41562 -13.03789 -12.54814 -12.48007 -12.37210 -12.01502 -11.69170 -11.19171 -11.10916 -10.71415 -10.60808 -10.54875 -10.51802 -9.71460 -9.49058 -8.46953 -8.41751 -7.64950 -6.03946 -4.07213 1.10669 1.54528 2.95403 3.25868 3.31629 3.36294 3.39219 3.57904 3.98388 4.23509 4.28205 4.45436 5.03041 5.16557 5.31477 5.32422 5.40300 5.63547 5.68334 5.91692 5.97022 6.29440 6.51402 6.66132 6.94485 7.50580 7.54332 7.66755 7.73711 7.83151 7.90658 8.28617 8.95601 9.55774 11.06002 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.007876 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.961297 B = 3554.026660 C = 4288.649007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.283 6.283 3 C 0.175 3.825 4 C -0.243 4.243 5 C 0.166 3.834 6 O -0.496 6.496 7 C -0.104 4.104 8 C 0.277 3.723 9 N -0.444 5.444 10 C -0.027 4.027 11 C -0.073 4.073 12 C 0.057 3.943 13 C -0.508 4.508 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.137 0.863 25 H 0.391 0.609 26 H 0.141 0.859 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 5.969 0.456 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.194 6.194 3 C 0.127 3.873 4 C -0.263 4.263 5 C 0.119 3.881 6 O -0.306 6.306 7 C -0.108 4.108 8 C -0.038 4.038 9 N -0.120 5.120 10 C -0.047 4.047 11 C -0.074 4.074 12 C 0.020 3.980 13 C -0.546 4.546 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.155 0.845 25 H 0.247 0.753 26 H 0.159 0.841 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.530 7.111 1.101 11.942 hybrid contribution -0.451 -0.582 -1.497 1.668 sum -9.981 6.528 -0.396 11.933 Atomic orbital electron populations 1.23090 0.79397 1.03923 1.00835 1.86325 1.20243 1.25915 1.86958 1.19007 0.92023 0.83694 0.92578 1.21244 1.00510 0.91222 1.13310 1.17839 0.87063 0.85294 0.97901 1.84740 1.72318 1.40022 1.33551 1.16329 0.91632 0.87241 1.15628 1.25505 0.92918 0.92504 0.92826 1.81159 1.08937 1.11254 1.10668 1.20862 1.00109 0.88824 0.94949 1.20091 0.90753 0.97876 0.98695 1.18247 0.93849 0.87737 0.98177 1.20945 1.33302 1.08706 0.91665 0.92644 1.24957 0.95582 0.96522 0.97041 1.69936 1.35134 1.17330 1.30836 0.86630 0.78171 0.78142 0.84910 1.20219 1.21292 1.20229 0.92944 0.92843 0.88281 0.84541 0.75278 0.84102 0.95013 0.94237 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 15 2 O -0.28 -5.02 9.61 -18.95 -0.18 -5.20 15 3 C 0.17 3.06 6.66 -39.08 -0.26 2.80 15 4 C -0.24 -3.50 8.95 -39.34 -0.35 -3.85 15 5 C 0.17 2.41 6.71 -38.74 -0.26 2.15 15 6 O -0.50 -6.17 12.93 -18.83 -0.24 -6.41 15 7 C -0.10 -1.65 5.76 -106.60 -0.61 -2.26 15 8 C 0.28 4.57 14.87 -22.47 -0.33 4.24 15 9 N -0.44 -7.90 18.54 41.84 0.78 -7.13 15 10 C -0.03 -0.47 9.37 -39.21 -0.37 -0.84 15 11 C -0.07 -1.44 5.08 -104.52 -0.53 -1.97 15 12 C 0.06 1.37 4.81 -29.03 -0.14 1.23 15 13 C -0.51 -13.49 9.09 -34.44 -0.31 -13.80 15 14 H 0.06 1.45 7.74 -52.48 -0.41 1.05 15 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 16 N -0.89 -25.58 13.29 55.43 0.74 -24.85 15 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 15 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 21 H 0.05 0.52 7.64 -51.93 -0.40 0.12 15 22 H 0.05 0.54 7.66 -51.93 -0.40 0.15 15 23 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.14 1.58 6.27 -52.49 -0.33 1.26 15 25 H 0.39 3.03 9.06 45.56 0.41 3.44 15 26 H 0.14 2.35 8.06 -52.49 -0.42 1.92 15 27 H 0.03 0.79 8.05 -51.93 -0.42 0.37 15 28 H 0.04 1.02 7.69 -51.93 -0.40 0.63 15 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -31.00 270.39 -4.05 -35.05 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -1.91 Total: -1.92 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.28 Total: -9.51 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 1.51 Total: -31.97 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.43 Total: -11.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.00 -4.05 -35.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260376002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.298 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds