Wall clock time and date at job start Mon Mar 30 2020 03:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35748 * 116.99967 * 2 1 4 4 C 1.38745 * 119.86357 * 0.25192 * 3 2 1 5 5 C 1.38375 * 120.03611 * 180.25579 * 4 3 2 6 6 O 1.35709 * 120.11552 * 179.77105 * 5 4 3 7 7 C 1.40336 * 119.76940 * 359.74785 * 5 4 3 8 8 C 1.43198 * 120.13791 * 180.02562 * 7 5 4 9 9 N 6.70053 * 117.14849 * 359.86038 * 2 1 3 10 10 C 1.39796 * 119.72481 * 359.97438 * 7 5 4 11 11 C 1.37656 * 119.95431 * 0.02562 * 10 7 5 12 12 C 1.50706 * 119.88232 * 179.97438 * 11 10 7 13 13 C 1.50698 * 109.47294 * 265.00573 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 H 1.08998 * 109.47141 * 300.00328 * 1 2 3 22 22 H 1.08997 * 109.46836 * 60.00223 * 1 2 3 23 23 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.97974 * 0.02562 * 4 3 2 25 25 H 0.96698 * 114.00086 * 269.97251 * 6 5 4 26 26 H 1.07995 * 120.02223 * 180.02562 * 10 7 5 27 27 H 1.09001 * 109.46953 * 25.00015 * 12 11 10 28 28 H 1.09000 * 109.47318 * 144.99613 * 12 11 10 29 29 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2869 2.3713 0.0053 5 6 1.9114 3.6061 0.0000 6 8 1.1711 4.7435 0.0004 7 6 3.3129 3.6782 -0.0054 8 6 3.9673 4.9519 -0.0104 9 7 4.4865 5.9623 -0.0145 10 6 4.0675 2.5014 -0.0049 11 6 3.4345 1.2790 0.0005 12 6 4.2495 0.0114 0.0005 13 6 4.4119 -0.4815 -1.4143 14 1 3.9688 0.0680 -2.2317 15 6 5.1252 -1.6345 -1.6651 16 7 5.6643 -2.3038 -0.6696 17 14 5.3259 -2.2458 -3.4187 18 1 6.0200 -1.2115 -4.2272 19 1 6.1291 -3.4949 -3.4187 20 1 3.9884 -2.5169 -4.0045 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2086 2.3118 0.0098 25 1 0.9533 5.0714 -0.8828 26 1 5.1463 2.5512 -0.0086 27 1 5.2310 0.2106 0.4307 28 1 3.7402 -0.7481 0.5938 29 1 6.1664 -3.1147 -0.8460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260376002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:14 Heat of formation + Delta-G solvation = -54.074839 kcal Electronic energy + Delta-G solvation = -15515.045098 eV Core-core repulsion = 12789.006231 eV Total energy + Delta-G solvation = -2726.038867 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44914 -39.48275 -37.70327 -37.16595 -35.11709 -32.57450 -31.56845 -28.83466 -28.02336 -25.12333 -24.17634 -22.71806 -19.96255 -19.18887 -18.41735 -17.93817 -17.48410 -16.58840 -16.39294 -15.76712 -15.29305 -14.95396 -14.73796 -14.48579 -14.31018 -13.89974 -13.82491 -13.44954 -12.96418 -12.91164 -12.59839 -12.37991 -12.23735 -11.79470 -11.75362 -11.46016 -11.38972 -10.50711 -9.75363 -9.02801 -8.10279 -6.21444 -0.16871 0.28975 1.45278 1.47176 1.54682 1.63882 1.93929 2.44851 2.46809 2.78297 2.94092 3.13013 3.21502 3.86730 4.02768 4.32175 4.42876 4.51146 4.63376 4.78421 4.86419 4.96320 5.13204 5.28112 5.42069 5.59993 5.83688 5.84368 6.25544 6.46389 6.52707 6.76340 6.89840 7.45554 8.98634 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.007876 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.961297 B = 3554.026660 C = 4288.649007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.175 3.825 4 C -0.229 4.229 5 C 0.195 3.805 6 O -0.496 6.496 7 C -0.110 4.110 8 C 0.292 3.708 9 N -0.467 5.467 10 C -0.021 4.021 11 C -0.111 4.111 12 C 0.068 3.932 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.173 0.827 25 H 0.417 0.583 26 H 0.137 0.863 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 7.175 -0.569 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.127 3.873 4 C -0.248 4.248 5 C 0.147 3.853 6 O -0.310 6.310 7 C -0.114 4.114 8 C -0.022 4.022 9 N -0.144 5.144 10 C -0.042 4.042 11 C -0.112 4.112 12 C 0.031 3.969 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.193 1.193 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.129 0.871 24 H 0.191 0.809 25 H 0.278 0.722 26 H 0.155 0.845 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.701 8.341 0.054 14.370 hybrid contribution 0.095 -0.893 -1.135 1.447 sum -11.606 7.448 -1.080 13.833 Atomic orbital electron populations 1.23463 0.76386 1.05560 1.02842 1.86278 1.23534 1.26535 1.86880 1.19034 0.91361 0.84858 0.92051 1.21424 1.01949 0.89652 1.11786 1.17811 0.86422 0.86101 0.94993 1.84687 1.71584 1.38945 1.35753 1.16241 0.92366 0.86155 1.16686 1.25479 0.92351 0.92258 0.92076 1.81178 1.09455 1.12079 1.11681 1.20729 1.00148 0.88835 0.94480 1.19697 0.91886 0.96445 1.03194 1.17892 0.93103 0.89483 0.96458 1.21316 1.32592 1.08637 0.92909 0.92591 1.25817 0.95425 0.96885 1.01064 1.70070 1.36226 1.17866 1.33017 0.85609 0.78423 0.77591 0.80077 1.19432 1.21127 1.19273 0.90706 0.90826 0.87128 0.80950 0.72218 0.84487 0.97406 0.97241 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 15 2 O -0.32 -11.10 9.61 -90.73 -0.87 -11.97 15 3 C 0.17 5.93 6.66 22.59 0.15 6.08 15 4 C -0.23 -5.79 8.95 22.42 0.20 -5.59 15 5 C 0.19 4.96 6.71 22.81 0.15 5.11 15 6 O -0.50 -10.08 12.93 -90.30 -1.17 -11.25 15 7 C -0.11 -3.30 5.76 -21.15 -0.12 -3.42 15 8 C 0.29 9.16 14.87 88.33 1.31 10.47 15 9 N -0.47 -15.98 18.54 19.00 0.35 -15.62 15 10 C -0.02 -0.74 9.37 22.51 0.21 -0.53 15 11 C -0.11 -4.45 5.08 -19.80 -0.10 -4.55 15 12 C 0.07 3.42 4.81 29.10 0.14 3.56 15 13 C -0.52 -28.12 9.09 25.60 0.23 -27.89 15 14 H 0.06 2.96 7.74 -2.91 -0.02 2.94 15 15 C 0.01 0.33 5.46 84.65 0.46 0.79 15 16 N -0.93 -55.03 13.29 21.45 0.28 -54.75 15 17 Si 0.96 43.17 29.54 68.60 2.03 45.19 15 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 21 H 0.07 1.21 7.64 -2.39 -0.02 1.19 15 22 H 0.07 1.22 7.66 -2.39 -0.02 1.21 15 23 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.17 3.10 6.27 -2.91 -0.02 3.08 15 25 H 0.42 4.38 9.06 -74.06 -0.67 3.71 15 26 H 0.14 4.72 8.06 -2.91 -0.02 4.70 15 27 H 0.01 0.41 8.05 -2.39 -0.02 0.39 15 28 H 0.01 0.52 7.69 -2.39 -0.02 0.50 15 29 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 Total: -1.00 -68.17 270.39 4.90 -63.27 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: 0.52 Total: -0.25 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 3.75 Total: -14.62 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: 0.64 Total: -70.37 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -2.04 Total: -23.22 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.17 4.90 -63.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260376002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.195 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds