Wall clock time and date at job start Mon Mar 30 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 O 1.20950 * 123.60853 * 2 1 4 4 C 1.34379 * 112.72365 * 179.97438 * 3 2 1 5 5 O 1.21741 * 127.34191 * 180.02562 * 4 3 2 6 6 C 1.46815 * 105.31106 * 359.78623 * 4 3 2 7 7 C 1.36921 * 123.59803 * 179.97438 * 2 1 3 8 8 C 1.38956 * 135.06389 * 0.03958 * 7 2 1 9 9 C 1.37844 * 119.67285 * 179.97438 * 8 7 2 10 10 C 1.38813 * 120.83632 * 359.97438 * 9 8 7 11 11 C 1.36898 * 120.47543 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.20772 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46869 * 264.99535 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08999 * 109.47288 * 270.02576 * 1 2 3 22 22 H 1.09000 * 109.46642 * 30.02015 * 1 2 3 23 23 H 1.08992 * 109.47305 * 150.02050 * 1 2 3 24 24 H 1.08001 * 120.16294 * 0.02562 * 8 7 2 25 25 H 1.08004 * 119.58911 * 180.02562 * 9 8 7 26 26 H 1.07995 * 119.76362 * 179.97438 * 10 9 8 27 27 H 1.09004 * 109.47210 * 144.99829 * 12 11 10 28 28 H 1.08994 * 109.47551 * 24.99481 * 12 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1345 1.0073 0.0000 4 6 3.4542 0.7536 0.0006 5 8 4.3621 1.5646 0.0011 6 6 3.5675 -0.7102 0.0062 7 6 2.2227 -1.1405 0.0005 8 6 1.9496 -2.5029 0.0004 9 6 2.9897 -3.4075 0.0006 10 6 4.3087 -2.9750 0.0002 11 6 4.6009 -1.6375 0.0003 12 6 6.0351 -1.1747 0.0005 13 6 6.4748 -0.9025 1.4160 14 1 5.7849 -1.0503 2.2337 15 6 7.7599 -0.4708 1.6677 16 7 8.6001 -0.2912 0.6720 17 14 8.3073 -0.1408 3.4229 18 1 8.1843 -1.3863 4.2223 19 1 9.7220 0.3107 3.4236 20 1 7.4506 0.9161 4.0183 21 1 -0.3634 0.0005 1.0276 22 1 -0.3632 0.8898 -0.5142 23 1 -0.3633 -0.8901 -0.5135 24 1 0.9273 -2.8514 -0.0005 25 1 2.7758 -4.4661 0.0001 26 1 5.1102 -3.6988 0.0007 27 1 6.1224 -0.2620 -0.5890 28 1 6.6670 -1.9495 -0.4336 29 1 9.5041 0.0129 0.8491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:21 Heat of formation + Delta-G solvation = 39.686012 kcal Electronic energy + Delta-G solvation = -16019.182820 eV Core-core repulsion = 13297.209729 eV Total energy + Delta-G solvation = -2721.973092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.94453 -38.36591 -37.49673 -33.92271 -33.07217 -31.25655 -31.05045 -27.12868 -26.38014 -24.23968 -23.13987 -22.39760 -19.17876 -17.99990 -17.70800 -17.27613 -16.23969 -15.66768 -14.90287 -14.46343 -14.12983 -13.89977 -13.71736 -12.95865 -12.65460 -12.60440 -12.27037 -11.95006 -11.73333 -11.22983 -11.06947 -10.58750 -10.49102 -9.89883 -9.66325 -9.34714 -9.25545 -8.35823 -8.30715 -7.12630 -5.96556 -3.99307 1.27440 1.89670 2.16457 3.00655 3.38282 3.41930 3.45681 3.71222 4.22516 4.53523 4.68375 4.94805 5.05145 5.18746 5.27814 5.35604 5.39710 5.56692 5.79075 6.01959 6.34259 6.42135 6.79981 6.93317 7.03017 7.34022 7.57041 7.79854 7.95970 8.04525 8.33844 8.48061 9.02158 9.62940 11.14280 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.008395 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.254481 B = 3334.637854 C = 3802.045040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.450 5.450 3 O -0.083 6.083 4 C 0.495 3.505 5 O -0.429 6.429 6 C -0.264 4.264 7 C 0.156 3.844 8 C -0.193 4.193 9 C -0.037 4.037 10 C -0.185 4.185 11 C 0.092 3.908 12 C 0.039 3.961 13 C -0.506 4.506 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 -4.735 -2.154 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.194 5.194 3 O -0.100 6.100 4 C 0.339 3.661 5 O -0.311 6.311 6 C -0.270 4.270 7 C 0.052 3.948 8 C -0.216 4.216 9 C -0.056 4.056 10 C -0.205 4.205 11 C 0.091 3.909 12 C 0.003 3.997 13 C -0.544 4.544 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.111 0.889 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.148 0.852 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.273 -3.888 -2.198 16.874 hybrid contribution 0.337 0.305 1.012 1.109 sum -15.935 -3.583 -1.187 16.376 Atomic orbital electron populations 1.21888 0.72020 1.04580 1.03227 1.42596 1.03479 0.95757 1.77522 1.84310 1.21025 1.20877 1.83741 1.20719 0.78913 0.89629 0.76800 1.91077 1.35611 1.56517 1.47914 1.20124 0.93416 0.93822 1.19663 1.18927 0.90259 0.89262 0.96359 1.19606 0.99500 0.87867 1.14619 1.21034 0.92277 0.98712 0.93565 1.20761 0.96226 0.95368 1.08175 1.19834 0.97128 0.90996 0.82973 1.18524 0.84687 0.97900 0.98614 1.20798 0.96947 1.45566 0.91056 0.92750 1.24942 0.96571 0.95220 0.97230 1.69942 1.05980 1.46271 1.30836 0.86585 0.77573 0.78723 0.84742 1.20174 1.21165 1.20177 0.91403 0.89627 0.88933 0.86107 0.85557 0.85187 0.94016 0.94726 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.05 11.19 59.85 0.67 1.72 15 2 N -0.45 -6.88 3.72 -65.48 -0.24 -7.13 15 3 O -0.08 -1.54 10.83 -7.85 -0.09 -1.63 15 4 C 0.49 11.22 8.91 34.20 0.30 11.52 15 5 O -0.43 -11.33 17.53 -18.96 -0.33 -11.67 15 6 C -0.26 -5.68 6.26 -105.08 -0.66 -6.34 15 7 C 0.16 2.66 6.83 -84.21 -0.57 2.08 15 8 C -0.19 -2.70 9.94 -39.46 -0.39 -3.09 15 9 C -0.04 -0.53 10.01 -39.51 -0.40 -0.93 15 10 C -0.19 -3.40 9.62 -39.85 -0.38 -3.78 15 11 C 0.09 2.05 5.05 -104.88 -0.53 1.52 15 12 C 0.04 1.06 5.04 -29.03 -0.15 0.92 15 13 C -0.51 -14.82 9.09 -34.44 -0.31 -15.13 15 14 H 0.05 1.58 7.74 -52.49 -0.41 1.18 15 15 C 0.06 1.84 5.46 -17.82 -0.10 1.74 15 16 N -0.89 -27.39 13.29 55.43 0.74 -26.65 15 17 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 15 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 21 H 0.07 0.50 8.14 -51.93 -0.42 0.07 15 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.09 0.57 8.05 -51.93 -0.42 0.16 15 24 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 25 H 0.13 1.33 8.06 -52.48 -0.42 0.91 15 26 H 0.13 2.24 8.06 -52.49 -0.42 1.82 15 27 H 0.04 1.24 7.64 -51.93 -0.40 0.85 15 28 H 0.03 0.94 8.05 -51.93 -0.42 0.52 15 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 263.85 15.07 3.98 3.98 Total: -1.00 -34.74 263.85 -6.37 -41.12 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -2.89 Total: -5.79 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.52 Total: -9.77 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.49 Total: -33.78 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.42 Total: -13.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.74 -6.37 -41.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.803 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds