Wall clock time and date at job start Mon Mar 30 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 O 1.20950 * 123.60853 * 2 1 4 4 C 1.34379 * 112.72365 * 179.97438 * 3 2 1 5 5 O 1.21741 * 127.34191 * 180.02562 * 4 3 2 6 6 C 1.46815 * 105.31106 * 359.78623 * 4 3 2 7 7 C 1.36921 * 123.59803 * 179.97438 * 2 1 3 8 8 C 1.38956 * 135.06389 * 0.03958 * 7 2 1 9 9 C 1.37844 * 119.67285 * 179.97438 * 8 7 2 10 10 C 1.38813 * 120.83632 * 359.97438 * 9 8 7 11 11 C 1.36898 * 120.47543 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.20772 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46869 * 264.99535 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08999 * 109.47288 * 270.02576 * 1 2 3 22 22 H 1.09000 * 109.46642 * 30.02015 * 1 2 3 23 23 H 1.08992 * 109.47305 * 150.02050 * 1 2 3 24 24 H 1.08001 * 120.16294 * 0.02562 * 8 7 2 25 25 H 1.08004 * 119.58911 * 180.02562 * 9 8 7 26 26 H 1.07995 * 119.76362 * 179.97438 * 10 9 8 27 27 H 1.09004 * 109.47210 * 144.99829 * 12 11 10 28 28 H 1.08994 * 109.47551 * 24.99481 * 12 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1345 1.0073 0.0000 4 6 3.4542 0.7536 0.0006 5 8 4.3621 1.5646 0.0011 6 6 3.5675 -0.7102 0.0062 7 6 2.2227 -1.1405 0.0005 8 6 1.9496 -2.5029 0.0004 9 6 2.9897 -3.4075 0.0006 10 6 4.3087 -2.9750 0.0002 11 6 4.6009 -1.6375 0.0003 12 6 6.0351 -1.1747 0.0005 13 6 6.4748 -0.9025 1.4160 14 1 5.7849 -1.0503 2.2337 15 6 7.7599 -0.4708 1.6677 16 7 8.6001 -0.2912 0.6720 17 14 8.3073 -0.1408 3.4229 18 1 8.1843 -1.3863 4.2223 19 1 9.7220 0.3107 3.4236 20 1 7.4506 0.9161 4.0183 21 1 -0.3634 0.0005 1.0276 22 1 -0.3632 0.8898 -0.5142 23 1 -0.3633 -0.8901 -0.5135 24 1 0.9273 -2.8514 -0.0005 25 1 2.7758 -4.4661 0.0001 26 1 5.1102 -3.6988 0.0007 27 1 6.1224 -0.2620 -0.5890 28 1 6.6670 -1.9495 -0.4336 29 1 9.5041 0.0129 0.8491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:21 Heat of formation + Delta-G solvation = 17.300744 kcal Electronic energy + Delta-G solvation = -16020.153518 eV Core-core repulsion = 13297.209729 eV Total energy + Delta-G solvation = -2722.943790 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.36040 -39.80818 -39.20012 -35.65253 -34.71680 -32.88160 -32.49539 -29.00104 -27.42142 -25.91550 -24.74664 -24.08679 -20.64929 -19.34701 -19.15791 -18.73528 -18.48086 -17.08872 -16.58482 -16.24792 -15.59025 -15.16427 -15.08219 -14.58615 -14.49291 -13.62709 -13.47386 -13.45451 -13.34985 -13.03781 -12.79313 -12.50695 -12.37948 -11.79697 -11.68474 -11.08763 -10.71153 -10.61510 -9.87967 -8.47954 -8.20259 -6.34203 -0.17939 0.52379 0.93231 1.33422 1.39311 1.42815 1.46586 2.22151 2.37263 2.84369 3.09664 3.39998 3.65863 4.11528 4.35877 4.41999 4.46111 4.50136 4.60421 4.73482 4.93514 5.09508 5.23048 5.29394 5.52146 5.67212 5.72433 5.91965 6.03278 6.14218 6.37498 6.75339 6.97045 7.32467 8.88651 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.008395 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.254481 B = 3334.637854 C = 3802.045040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.443 5.443 3 O -0.075 6.075 4 C 0.475 3.525 5 O -0.497 6.497 6 C -0.309 4.309 7 C 0.166 3.834 8 C -0.163 4.163 9 C -0.015 4.015 10 C -0.192 4.192 11 C 0.048 3.952 12 C 0.051 3.949 13 C -0.521 4.521 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.255 1.255 19 H -0.276 1.276 20 H -0.279 1.279 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.132 0.868 24 H 0.183 0.817 25 H 0.183 0.817 26 H 0.132 0.868 27 H -0.008 1.008 28 H 0.016 0.984 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 -7.381 -1.068 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.186 5.186 3 O -0.089 6.089 4 C 0.324 3.676 5 O -0.386 6.386 6 C -0.316 4.316 7 C 0.059 3.941 8 C -0.185 4.185 9 C -0.034 4.034 10 C -0.212 4.212 11 C 0.047 3.953 12 C 0.014 3.986 13 C -0.559 4.559 14 H 0.068 0.932 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.204 1.204 21 H 0.108 0.892 22 H 0.119 0.881 23 H 0.150 0.850 24 H 0.200 0.800 25 H 0.200 0.800 26 H 0.150 0.850 27 H 0.010 0.990 28 H 0.035 0.965 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.239 -6.549 -1.115 21.301 hybrid contribution 1.281 1.045 0.607 1.761 sum -18.958 -5.504 -0.508 19.748 Atomic orbital electron populations 1.22581 0.67578 1.07371 1.05533 1.43563 1.05107 0.94413 1.75552 1.84282 1.19750 1.22553 1.82350 1.21079 0.79585 0.90197 0.76769 1.91009 1.37876 1.57976 1.51704 1.20152 0.96025 0.92902 1.22499 1.19238 0.88175 0.90982 0.95722 1.20341 1.02334 0.85590 1.10238 1.21595 0.89945 1.01617 0.90199 1.20912 0.98945 0.93291 1.08045 1.19498 0.94480 0.93356 0.87925 1.18153 0.88609 0.95104 0.96756 1.21136 0.97185 1.45434 0.92177 0.93217 1.25941 0.96687 0.94850 1.02022 1.70081 1.06389 1.47198 1.33284 0.85499 0.77242 0.79125 0.79182 1.17965 1.20103 1.20439 0.89229 0.88050 0.85026 0.79958 0.79993 0.85024 0.98988 0.96537 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 11.19 127.77 1.43 2.68 15 2 N -0.44 -12.27 3.72 -361.08 -1.34 -13.61 15 3 O -0.07 -2.77 10.83 91.40 0.99 -1.78 15 4 C 0.48 22.93 8.91 70.07 0.62 23.56 15 5 O -0.50 -28.95 17.53 18.57 0.33 -28.62 15 6 C -0.31 -13.69 6.26 -20.16 -0.13 -13.81 15 7 C 0.17 5.12 6.83 39.25 0.27 5.39 15 8 C -0.16 -3.50 9.94 22.35 0.22 -3.28 15 9 C -0.01 -0.35 10.01 22.31 0.22 -0.12 15 10 C -0.19 -6.81 9.62 22.09 0.21 -6.60 15 11 C 0.05 2.26 5.05 -20.03 -0.10 2.16 15 12 C 0.05 2.97 5.04 29.10 0.15 3.12 15 13 C -0.52 -32.41 9.09 25.60 0.23 -32.18 15 14 H 0.05 3.04 7.74 -2.91 -0.02 3.01 15 15 C 0.00 0.18 5.46 84.66 0.46 0.65 15 16 N -0.93 -60.29 13.29 21.45 0.28 -60.00 15 17 Si 0.97 47.73 29.54 68.60 2.03 49.76 15 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 15 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 15 21 H 0.09 0.80 8.14 -2.39 -0.02 0.78 15 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 15 23 H 0.13 0.64 8.05 -2.39 -0.02 0.62 15 24 H 0.18 1.83 8.06 -2.91 -0.02 1.81 15 25 H 0.18 2.35 8.06 -2.91 -0.02 2.33 15 26 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 27 H -0.01 -0.55 7.64 -2.38 -0.02 -0.56 15 28 H 0.02 0.98 8.05 -2.39 -0.02 0.96 15 29 H 0.27 16.08 8.31 -92.70 -0.77 15.31 15 Total: -1.00 -86.49 263.85 7.04 -79.45 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: 1.16 Total: -6.75 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.59 Total: -18.44 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.06 Total: -73.61 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: 1.32 Total: -30.40 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -86.49 7.04 -79.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.752 kcal (2) G-P(sol) polarization free energy of solvation -86.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds