Wall clock time and date at job start Mon Mar 30 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21270 * 120.00135 * 2 1 4 4 N 1.34783 * 119.99735 * 179.97438 * 2 1 3 5 5 C 1.39176 * 119.99509 * 185.27973 * 4 2 1 6 6 C 1.38840 * 120.18545 * 34.94157 * 5 4 2 7 7 C 1.38023 * 120.07736 * 180.32497 * 6 5 4 8 8 C 1.38721 * 120.43980 * 359.67152 * 7 6 5 9 9 C 1.37704 * 120.35580 * 0.02562 * 8 7 6 10 10 C 1.39835 * 119.91408 * 0.02562 * 9 8 7 11 11 C 1.47492 * 120.21329 * 180.02562 * 10 9 8 12 12 O 1.21830 * 120.00134 * 175.01116 * 11 10 9 13 13 C 1.41799 * 120.00392 * 355.01418 * 11 10 9 14 14 H 1.08001 * 119.99515 * 5.02386 * 13 11 10 15 15 C 1.40330 * 120.00228 * 184.75620 * 13 11 10 16 16 N 1.30542 * 120.00191 * 355.24350 * 15 13 11 17 17 Si 1.86799 * 119.99962 * 175.25000 * 15 13 11 18 18 H 1.48500 * 109.47497 * 94.99742 * 17 15 13 19 19 H 1.48507 * 109.46953 * 214.99434 * 17 15 13 20 20 H 1.48497 * 109.47203 * 334.99305 * 17 15 13 21 21 H 1.08991 * 109.47110 * 240.00231 * 1 2 3 22 22 H 1.08999 * 109.46471 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46556 * 120.00261 * 1 2 3 24 24 H 0.96994 * 119.99726 * 5.27572 * 4 2 1 25 25 H 1.08008 * 119.95920 * 359.97438 * 6 5 4 26 26 H 1.08003 * 119.77794 * 179.69605 * 7 6 5 27 27 H 1.08003 * 119.82679 * 180.02562 * 8 7 6 28 28 H 1.07995 * 120.04416 * 180.02562 * 9 8 7 29 29 H 0.96991 * 120.00363 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5682 -1.1697 0.1114 6 6 4.2075 -0.2195 0.8964 7 6 5.5839 -0.2199 0.9994 8 6 6.3387 -1.1703 0.3277 9 6 5.7230 -2.1249 -0.4507 10 6 4.3295 -2.1376 -0.5665 11 6 3.6631 -3.1573 -1.3980 12 8 2.4468 -3.2221 -1.4244 13 6 4.4380 -4.0624 -2.1668 14 1 5.5146 -4.0589 -2.0816 15 6 3.8056 -4.9665 -3.0341 16 7 2.5026 -5.0387 -3.0649 17 14 4.8286 -6.0667 -4.1442 18 1 5.0281 -7.3839 -3.4881 19 1 4.1227 -6.2594 -5.4365 20 1 6.1480 -5.4316 -4.3908 21 1 -0.3633 -0.5138 0.8899 22 1 -0.3632 1.0277 -0.0005 23 1 -0.3632 -0.5139 -0.8900 24 1 1.6989 -2.0055 -0.0763 25 1 3.6274 0.5243 1.4224 26 1 6.0764 0.5246 1.6074 27 1 7.4151 -1.1617 0.4157 28 1 6.3155 -2.8627 -0.9712 29 1 2.0655 -5.6638 -3.6641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260426694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:53 Heat of formation + Delta-G solvation = -55.300748 kcal Electronic energy + Delta-G solvation = -15862.572569 eV Core-core repulsion = 13136.480542 eV Total energy + Delta-G solvation = -2726.092027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93056 -37.95795 -36.22904 -34.09677 -32.74412 -30.56319 -30.27867 -28.02194 -26.76516 -22.85483 -22.22116 -19.84655 -19.74321 -16.90526 -16.68391 -16.40056 -15.65185 -15.01722 -14.61099 -13.95388 -13.88972 -13.24467 -12.95362 -12.84393 -12.53594 -12.30488 -11.91450 -11.58548 -11.49387 -11.30944 -11.03295 -10.83214 -10.44611 -10.27237 -9.75861 -9.37405 -9.08988 -8.08668 -7.61675 -7.37391 -6.44268 -5.03205 1.76709 2.02437 2.98020 3.06913 3.10728 3.11440 3.79744 3.92007 4.05366 4.61252 5.19069 5.49287 5.55463 5.60538 5.63266 5.69723 5.75838 6.04167 6.05075 6.21905 6.38316 6.71118 6.97027 6.98332 7.09061 7.18528 7.28416 7.70085 7.91250 8.13805 8.64580 8.66626 8.77405 10.14955 10.36419 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026319 B = 0.008812 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.594820 B = 3176.597272 C = 4131.758232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.550 6.550 4 N -0.648 5.648 5 C 0.169 3.831 6 C -0.139 4.139 7 C -0.112 4.112 8 C -0.154 4.154 9 C -0.077 4.077 10 C -0.134 4.134 11 C 0.391 3.609 12 O -0.550 6.550 13 C -0.510 4.510 14 H 0.076 0.924 15 C 0.080 3.920 16 N -0.732 5.732 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.426 0.574 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 3.299 4.574 5.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.429 6.429 4 N -0.300 5.300 5 C 0.073 3.927 6 C -0.159 4.159 7 C -0.131 4.131 8 C -0.173 4.173 9 C -0.096 4.096 10 C -0.138 4.138 11 C 0.290 3.710 12 O -0.442 6.442 13 C -0.541 4.541 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.360 5.360 17 Si 0.731 3.269 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.184 1.184 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.272 0.728 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.590 3.928 4.518 6.015 hybrid contribution 0.460 -0.884 -0.629 1.178 sum 1.049 3.044 3.889 5.049 Atomic orbital electron populations 1.21868 0.91588 1.04900 1.04641 1.20936 0.90833 0.83463 0.75431 1.90664 1.70818 1.31689 1.49712 1.43904 1.05462 1.11014 1.69582 1.18002 0.83193 0.96297 0.95197 1.20968 0.94821 1.00013 1.00096 1.20917 0.93347 0.98699 1.00130 1.21010 0.99218 0.96874 1.00182 1.21354 0.93728 0.97602 0.96905 1.21737 0.94064 0.99286 0.98672 1.18002 0.88561 0.82841 0.81635 1.90271 1.15454 1.72993 1.65446 1.20928 0.95345 1.16087 1.21705 0.90546 1.26009 0.94867 0.96732 0.96793 1.69937 1.09518 1.27696 1.28815 0.86332 0.80838 0.80247 0.79457 1.19396 1.20047 1.18356 0.89477 0.89279 0.88983 0.72782 0.85789 0.86767 0.86764 0.85088 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.32 36.01 0.37 -1.94 15 2 C 0.50 9.64 7.66 -10.98 -0.08 9.55 15 3 O -0.55 -12.02 14.87 5.57 0.08 -11.94 15 4 N -0.65 -13.59 4.70 -9.64 -0.05 -13.63 15 5 C 0.17 3.76 6.26 -83.43 -0.52 3.24 15 6 C -0.14 -2.77 8.64 -39.44 -0.34 -3.11 15 7 C -0.11 -1.97 10.03 -39.48 -0.40 -2.36 15 8 C -0.15 -2.69 10.02 -39.60 -0.40 -3.09 15 9 C -0.08 -1.57 9.43 -39.18 -0.37 -1.94 15 10 C -0.13 -3.16 5.90 -104.65 -0.62 -3.78 15 11 C 0.39 10.57 6.89 -34.45 -0.24 10.33 15 12 O -0.55 -15.81 12.46 5.07 0.06 -15.74 15 13 C -0.51 -13.47 8.85 -37.44 -0.33 -13.80 15 14 H 0.08 1.84 6.05 -52.49 -0.32 1.52 15 15 C 0.08 2.05 5.50 -17.31 -0.10 1.96 15 16 N -0.73 -19.91 11.75 55.57 0.65 -19.26 15 17 Si 0.91 18.57 29.56 -169.99 -5.03 13.54 15 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 19 H -0.28 -5.54 7.11 56.52 0.40 -5.13 15 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.09 1.08 8.12 -51.93 -0.42 0.66 15 23 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.43 9.10 6.29 -40.82 -0.26 8.84 15 25 H 0.12 2.43 6.53 -52.48 -0.34 2.09 15 26 H 0.11 1.63 8.06 -52.48 -0.42 1.21 15 27 H 0.11 1.61 8.06 -52.48 -0.42 1.19 15 28 H 0.13 2.52 6.22 -52.49 -0.33 2.19 15 29 H 0.27 6.72 8.29 -40.82 -0.34 6.38 15 LS Contribution 258.07 15.07 3.89 3.89 Total: -1.00 -31.67 258.07 -5.89 -37.56 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -2.49 Total: 10.53 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.02 Total: -4.94 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.61 Total: -32.89 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: 0.15 Total: -27.68 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.67 -5.89 -37.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.743 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds