Wall clock time and date at job start Mon Mar 30 2020 03:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21270 * 120.00135 * 2 1 4 4 N 1.34783 * 119.99735 * 179.97438 * 2 1 3 5 5 C 1.39176 * 119.99509 * 185.27973 * 4 2 1 6 6 C 1.38840 * 120.18545 * 34.94157 * 5 4 2 7 7 C 1.38023 * 120.07736 * 180.32497 * 6 5 4 8 8 C 1.38721 * 120.43980 * 359.67152 * 7 6 5 9 9 C 1.37704 * 120.35580 * 0.02562 * 8 7 6 10 10 C 1.39835 * 119.91408 * 0.02562 * 9 8 7 11 11 C 1.47492 * 120.21329 * 180.02562 * 10 9 8 12 12 O 1.21830 * 120.00134 * 175.01116 * 11 10 9 13 13 C 1.41799 * 120.00392 * 355.01418 * 11 10 9 14 14 H 1.08001 * 119.99515 * 5.02386 * 13 11 10 15 15 C 1.40330 * 120.00228 * 184.75620 * 13 11 10 16 16 N 1.30542 * 120.00191 * 355.24350 * 15 13 11 17 17 Si 1.86799 * 119.99962 * 175.25000 * 15 13 11 18 18 H 1.48500 * 109.47497 * 94.99742 * 17 15 13 19 19 H 1.48507 * 109.46953 * 214.99434 * 17 15 13 20 20 H 1.48497 * 109.47203 * 334.99305 * 17 15 13 21 21 H 1.08991 * 109.47110 * 240.00231 * 1 2 3 22 22 H 1.08999 * 109.46471 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46556 * 120.00261 * 1 2 3 24 24 H 0.96994 * 119.99726 * 5.27572 * 4 2 1 25 25 H 1.08008 * 119.95920 * 359.97438 * 6 5 4 26 26 H 1.08003 * 119.77794 * 179.69605 * 7 6 5 27 27 H 1.08003 * 119.82679 * 180.02562 * 8 7 6 28 28 H 1.07995 * 120.04416 * 180.02562 * 9 8 7 29 29 H 0.96991 * 120.00363 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5682 -1.1697 0.1114 6 6 4.2075 -0.2195 0.8964 7 6 5.5839 -0.2199 0.9994 8 6 6.3387 -1.1703 0.3277 9 6 5.7230 -2.1249 -0.4507 10 6 4.3295 -2.1376 -0.5665 11 6 3.6631 -3.1573 -1.3980 12 8 2.4468 -3.2221 -1.4244 13 6 4.4380 -4.0624 -2.1668 14 1 5.5146 -4.0589 -2.0816 15 6 3.8056 -4.9665 -3.0341 16 7 2.5026 -5.0387 -3.0649 17 14 4.8286 -6.0667 -4.1442 18 1 5.0281 -7.3839 -3.4881 19 1 4.1227 -6.2594 -5.4365 20 1 6.1480 -5.4316 -4.3908 21 1 -0.3633 -0.5138 0.8899 22 1 -0.3632 1.0277 -0.0005 23 1 -0.3632 -0.5139 -0.8900 24 1 1.6989 -2.0055 -0.0763 25 1 3.6274 0.5243 1.4224 26 1 6.0764 0.5246 1.6074 27 1 7.4151 -1.1617 0.4157 28 1 6.3155 -2.8627 -0.9712 29 1 2.0655 -5.6638 -3.6641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260426694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:52 Heat of formation + Delta-G solvation = -76.170246 kcal Electronic energy + Delta-G solvation = -15863.477538 eV Core-core repulsion = 13136.480542 eV Total energy + Delta-G solvation = -2726.996996 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.50571 -39.59164 -38.08232 -35.70243 -34.69860 -32.19340 -31.66569 -29.47299 -28.64928 -24.54194 -23.76914 -21.61496 -21.27795 -18.62319 -18.40542 -17.91707 -17.43404 -16.55886 -16.19365 -15.54916 -15.43143 -14.89706 -14.60607 -14.50330 -14.26378 -13.48931 -13.33079 -13.29345 -13.07437 -12.80867 -12.69823 -12.44579 -12.13894 -12.00395 -11.32189 -10.99392 -10.91810 -9.69337 -9.57797 -8.97923 -8.36442 -7.07290 0.16223 0.47679 1.37701 1.39416 1.55221 1.62378 2.20420 2.22437 2.36336 2.92924 3.67693 3.84044 4.08108 4.13264 4.30516 4.45749 4.54985 4.57450 4.67905 4.74974 5.00897 5.14081 5.21584 5.42556 5.49015 5.63902 5.72248 5.94615 6.18468 6.50565 6.69146 6.81170 7.15702 8.19326 8.44572 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026319 B = 0.008812 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.594820 B = 3176.597272 C = 4131.758232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.497 3.503 3 O -0.582 6.582 4 N -0.657 5.657 5 C 0.147 3.853 6 C -0.150 4.150 7 C -0.096 4.096 8 C -0.142 4.142 9 C -0.081 4.081 10 C -0.176 4.176 11 C 0.369 3.631 12 O -0.584 6.584 13 C -0.540 4.540 14 H 0.093 0.907 15 C 0.028 3.972 16 N -0.779 5.779 17 Si 0.991 3.009 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.249 1.249 21 H 0.114 0.886 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.421 0.579 25 H 0.125 0.875 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.137 0.863 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 3.577 4.853 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.288 3.712 3 O -0.463 6.463 4 N -0.307 5.307 5 C 0.051 3.949 6 C -0.171 4.171 7 C -0.115 4.115 8 C -0.160 4.160 9 C -0.100 4.100 10 C -0.180 4.180 11 C 0.270 3.730 12 O -0.478 6.478 13 C -0.570 4.570 14 H 0.111 0.889 15 C -0.192 4.192 16 N -0.407 5.407 17 Si 0.810 3.190 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.172 1.172 21 H 0.133 0.867 22 H 0.125 0.875 23 H 0.115 0.885 24 H 0.266 0.734 25 H 0.143 0.857 26 H 0.175 0.825 27 H 0.177 0.823 28 H 0.155 0.845 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.429 4.218 4.814 6.846 hybrid contribution -0.084 -0.891 -0.629 1.094 sum 2.345 3.327 4.185 5.838 Atomic orbital electron populations 1.21908 0.87265 1.06605 1.06124 1.21908 0.92893 0.82351 0.74068 1.90626 1.72014 1.32417 1.51234 1.44054 1.05441 1.11399 1.69758 1.18332 0.83939 0.96833 0.95824 1.21139 0.96239 0.99588 1.00107 1.21442 0.92285 0.98761 0.98983 1.21434 1.01390 0.95089 0.98128 1.21536 0.92468 0.98602 0.97396 1.21571 0.95725 1.00038 1.00627 1.18595 0.88559 0.83783 0.82037 1.90222 1.16680 1.74184 1.66718 1.21400 0.96348 1.16810 1.22439 0.88925 1.27149 0.96049 0.97954 0.98020 1.70050 1.11716 1.28934 1.30049 0.85087 0.79016 0.77964 0.76938 1.18265 1.19460 1.17204 0.86748 0.87461 0.88508 0.73434 0.85749 0.82519 0.82272 0.84514 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.32 71.24 0.74 -3.48 15 2 C 0.50 19.22 7.66 87.66 0.67 19.89 15 3 O -0.58 -25.65 14.87 -3.00 -0.04 -25.69 15 4 N -0.66 -28.51 4.70 -302.80 -1.42 -29.93 15 5 C 0.15 6.67 6.26 38.69 0.24 6.91 15 6 C -0.15 -5.90 8.64 22.36 0.19 -5.70 15 7 C -0.10 -3.07 10.03 22.33 0.22 -2.85 15 8 C -0.14 -4.49 10.02 22.26 0.22 -4.27 15 9 C -0.08 -3.23 9.43 22.53 0.21 -3.02 15 10 C -0.18 -8.51 5.90 -19.88 -0.12 -8.62 15 11 C 0.37 20.79 6.89 25.59 0.18 20.97 15 12 O -0.58 -35.32 12.46 -4.76 -0.06 -35.38 15 13 C -0.54 -29.13 8.85 23.66 0.21 -28.92 15 14 H 0.09 4.48 6.05 -2.91 -0.02 4.47 15 15 C 0.03 1.46 5.50 85.39 0.47 1.93 15 16 N -0.78 -43.68 11.75 21.89 0.26 -43.42 15 17 Si 0.99 37.93 29.56 68.60 2.03 39.96 15 18 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 19 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 20 H -0.25 -8.98 7.11 99.48 0.71 -8.28 15 21 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.11 2.43 8.12 -2.39 -0.02 2.41 15 23 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15 24 H 0.42 18.98 6.29 -92.71 -0.58 18.39 15 25 H 0.12 4.81 6.53 -2.91 -0.02 4.79 15 26 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 27 H 0.16 3.63 8.06 -2.91 -0.02 3.60 15 28 H 0.14 5.12 6.22 -2.91 -0.02 5.10 15 29 H 0.28 14.17 8.29 -92.71 -0.77 13.40 15 Total: -1.00 -71.79 258.07 4.61 -67.18 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.61 Total: 34.43 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 3.24 Total: -7.16 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.17 Total: -73.35 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -0.10 Total: -61.07 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -71.79 4.61 -67.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.986 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds