Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00242 * 2 1 4 4 H 1.48504 * 109.47177 * 270.00082 * 3 2 1 5 5 H 1.48502 * 109.47257 * 29.99705 * 3 2 1 6 6 H 1.48500 * 109.47597 * 149.99723 * 3 2 1 7 7 C 1.37882 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00262 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99949 * 179.97438 * 7 2 1 10 10 H 1.09005 * 110.85546 * 56.20071 * 9 7 2 11 11 C 1.54728 * 110.97484 * 180.02562 * 9 7 2 12 12 C 1.51688 * 102.55114 * 93.93405 * 11 9 7 13 13 C 1.47663 * 125.86558 * 195.39396 * 12 11 9 14 14 C 1.39648 * 120.12235 * 359.97438 * 13 12 11 15 15 C 1.37956 * 119.95851 * 180.02562 * 14 13 12 16 16 C 1.38281 * 120.21390 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.24259 * 359.97438 * 16 15 14 18 18 O 1.35910 * 119.97940 * 179.97438 * 17 16 15 19 19 C 1.38485 * 120.04038 * 0.25375 * 17 16 15 20 20 N 1.29075 * 108.26788 * 15.65171 * 12 11 9 21 21 O 1.41391 * 112.87621 * 359.89175 * 20 12 11 22 22 H 0.96995 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.79391 * 335.66813 * 11 9 7 24 24 H 1.09005 * 110.79517 * 212.19692 * 11 9 7 25 25 H 1.08005 * 120.01490 * 0.02562 * 14 13 12 26 26 H 1.08006 * 119.89372 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.88131 * 179.97438 * 16 15 14 28 28 H 0.96700 * 114.00376 * 90.00022 * 18 17 16 29 29 H 1.07996 * 120.10587 * 179.74538 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.9000 -0.6269 0.8459 11 6 4.0654 -2.6389 0.0001 12 6 4.2777 -2.9107 -1.4771 13 6 4.4899 -4.2367 -2.0910 14 6 4.5082 -5.3832 -1.2939 15 6 4.7073 -6.6204 -1.8710 16 6 4.8896 -6.7297 -3.2373 17 6 4.8731 -5.5957 -4.0378 18 8 5.0534 -5.7093 -5.3801 19 6 4.6788 -4.3482 -3.4688 20 7 4.2463 -1.7831 -2.1045 21 8 4.0281 -0.6818 -1.2451 22 1 -0.4849 0.8400 -0.0004 23 1 3.3371 -3.3325 0.4204 24 1 5.0093 -2.6915 0.5427 25 1 4.3665 -5.3013 -0.2264 26 1 4.7208 -7.5065 -1.2536 27 1 5.0455 -7.7008 -3.6834 28 1 4.2337 -5.8321 -5.8781 29 1 4.6698 -3.4649 -4.0901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260438035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = 1.856892 kcal Electronic energy + Delta-G solvation = -15511.857916 eV Core-core repulsion = 12788.244431 eV Total energy + Delta-G solvation = -2723.613485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.84187 -38.80507 -36.67766 -33.13750 -32.48216 -30.43453 -29.81177 -29.40086 -25.56995 -23.44296 -22.48857 -20.77020 -19.82828 -17.87896 -17.12049 -16.45847 -15.66900 -15.47172 -15.03301 -14.75147 -14.16079 -13.78278 -13.55327 -12.97231 -12.58542 -12.36905 -12.03688 -11.89943 -11.51206 -11.26903 -10.87048 -10.70815 -10.54877 -10.06224 -9.87710 -9.66451 -9.05804 -8.75571 -8.71784 -7.97672 -6.24966 -4.36815 0.91350 1.28164 2.71529 3.29344 3.34770 3.45350 3.75217 4.00445 4.16035 4.37351 4.71312 4.89173 5.03465 5.08010 5.22219 5.41795 5.55228 5.72003 5.79602 5.87777 5.92137 6.19166 6.36100 6.41061 6.50349 6.72232 6.77530 6.86671 7.38194 7.58650 8.14983 8.35942 8.73390 9.36086 10.85476 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042448 B = 0.006249 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.475715 B = 4479.547783 C = 4622.980026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.088 3.912 3 Si 0.890 3.110 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.131 3.869 10 H 0.081 0.919 11 C -0.128 4.128 12 C 0.090 3.910 13 C 0.003 3.997 14 C -0.102 4.102 15 C -0.106 4.106 16 C -0.141 4.141 17 C 0.100 3.900 18 O -0.500 6.500 19 C -0.115 4.115 20 N -0.275 5.275 21 O -0.208 6.208 22 H 0.268 0.732 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.390 0.610 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -12.561 -3.606 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.075 3.925 10 H 0.098 0.902 11 C -0.167 4.167 12 C -0.100 4.100 13 C 0.001 3.999 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.160 4.160 17 C 0.056 3.944 18 O -0.310 6.310 19 C -0.135 4.135 20 N -0.014 5.014 21 O -0.232 6.232 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.246 0.754 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.299 -11.601 -4.440 15.517 hybrid contribution -0.419 0.491 0.682 0.939 sum 8.880 -11.110 -3.759 14.711 Atomic orbital electron populations 1.69917 1.06505 1.27696 1.47893 1.25000 0.94749 0.99745 0.92248 0.86578 0.79774 0.82547 0.79367 1.19410 1.21622 1.18948 1.21162 0.87918 0.95215 1.53537 0.90251 1.21890 0.96026 0.89480 0.85115 0.90203 1.22878 1.01479 1.00049 0.92292 1.23942 0.98665 0.92440 0.94913 1.17781 1.00036 0.89761 0.92283 1.21299 0.99240 0.91312 1.00319 1.20910 0.99770 0.97429 0.94307 1.21474 1.02036 0.98241 0.94298 1.18305 1.00507 0.92016 0.83601 1.84818 1.35691 1.95155 1.15310 1.21640 0.99204 0.97954 0.94688 1.77940 1.08472 0.95860 1.19096 1.91146 1.82647 1.22867 1.26565 0.92180 0.88653 0.90360 0.84906 0.85148 0.85434 0.75419 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.82 13.96 55.43 0.77 -26.05 15 2 C 0.09 2.57 5.47 -17.82 -0.10 2.47 15 3 Si 0.89 22.56 26.69 -169.99 -4.54 18.02 15 4 H -0.27 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.26 -6.40 6.44 56.52 0.36 -6.04 15 7 C -0.54 -15.27 9.39 -34.44 -0.32 -15.59 15 8 H 0.08 2.38 7.86 -52.49 -0.41 1.97 15 9 C 0.13 3.17 2.94 -26.97 -0.08 3.09 15 10 H 0.08 1.87 6.99 -51.93 -0.36 1.50 15 11 C -0.13 -2.48 5.80 -26.49 -0.15 -2.64 15 12 C 0.09 1.79 7.15 -79.42 -0.57 1.22 15 13 C 0.00 0.04 5.87 -105.05 -0.62 -0.57 15 14 C -0.10 -1.33 9.61 -39.16 -0.38 -1.71 15 15 C -0.11 -1.15 10.02 -39.67 -0.40 -1.55 15 16 C -0.14 -1.58 9.98 -39.35 -0.39 -1.97 15 17 C 0.10 1.30 6.70 -39.28 -0.26 1.04 15 18 O -0.50 -5.75 13.50 -19.46 -0.26 -6.01 15 19 C -0.11 -1.77 9.62 -39.02 -0.38 -2.15 15 20 N -0.28 -6.41 12.12 35.30 0.43 -5.98 15 21 O -0.21 -5.35 10.73 -11.37 -0.12 -5.47 15 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 23 H 0.10 1.75 7.59 -51.93 -0.39 1.36 15 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.13 1.53 7.36 -52.48 -0.39 1.14 15 26 H 0.13 1.02 8.06 -52.48 -0.42 0.60 15 27 H 0.13 1.12 8.06 -52.49 -0.42 0.70 15 28 H 0.39 2.62 9.06 45.56 0.41 3.03 15 29 H 0.14 2.24 7.83 -52.49 -0.41 1.83 15 LS Contribution 259.48 15.07 3.91 3.91 Total: -1.00 -33.57 259.48 -5.45 -39.02 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.00 Total: 0.92 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.64 Total: -18.36 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 1.20 Total: -32.03 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.38 Total: -11.48 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.54 Total: 18.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.57 -5.45 -39.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.875 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds