Wall clock time and date at job start Mon Mar 30 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00242 * 2 1 4 4 H 1.48504 * 109.47177 * 270.00082 * 3 2 1 5 5 H 1.48502 * 109.47257 * 29.99705 * 3 2 1 6 6 H 1.48500 * 109.47597 * 149.99723 * 3 2 1 7 7 C 1.37882 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00262 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99949 * 179.97438 * 7 2 1 10 10 H 1.09005 * 110.85546 * 56.20071 * 9 7 2 11 11 C 1.54728 * 110.97484 * 180.02562 * 9 7 2 12 12 C 1.51688 * 102.55114 * 93.93405 * 11 9 7 13 13 C 1.47663 * 125.86558 * 195.39396 * 12 11 9 14 14 C 1.39648 * 120.12235 * 359.97438 * 13 12 11 15 15 C 1.37956 * 119.95851 * 180.02562 * 14 13 12 16 16 C 1.38281 * 120.21390 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.24259 * 359.97438 * 16 15 14 18 18 O 1.35910 * 119.97940 * 179.97438 * 17 16 15 19 19 C 1.38485 * 120.04038 * 0.25375 * 17 16 15 20 20 N 1.29075 * 108.26788 * 15.65171 * 12 11 9 21 21 O 1.41391 * 112.87621 * 359.89175 * 20 12 11 22 22 H 0.96995 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.79391 * 335.66813 * 11 9 7 24 24 H 1.09005 * 110.79517 * 212.19692 * 11 9 7 25 25 H 1.08005 * 120.01490 * 0.02562 * 14 13 12 26 26 H 1.08006 * 119.89372 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.88131 * 179.97438 * 16 15 14 28 28 H 0.96700 * 114.00376 * 90.00022 * 18 17 16 29 29 H 1.07996 * 120.10587 * 179.74538 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.9000 -0.6269 0.8459 11 6 4.0654 -2.6389 0.0001 12 6 4.2777 -2.9107 -1.4771 13 6 4.4899 -4.2367 -2.0910 14 6 4.5082 -5.3832 -1.2939 15 6 4.7073 -6.6204 -1.8710 16 6 4.8896 -6.7297 -3.2373 17 6 4.8731 -5.5957 -4.0378 18 8 5.0534 -5.7093 -5.3801 19 6 4.6788 -4.3482 -3.4688 20 7 4.2463 -1.7831 -2.1045 21 8 4.0281 -0.6818 -1.2451 22 1 -0.4849 0.8400 -0.0004 23 1 3.3371 -3.3325 0.4204 24 1 5.0093 -2.6915 0.5427 25 1 4.3665 -5.3013 -0.2264 26 1 4.7208 -7.5065 -1.2536 27 1 5.0455 -7.7008 -3.6834 28 1 4.2337 -5.8321 -5.8781 29 1 4.6698 -3.4649 -4.0901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260438035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:45 Heat of formation + Delta-G solvation = -23.370624 kcal Electronic energy + Delta-G solvation = -15512.951863 eV Core-core repulsion = 12788.244431 eV Total energy + Delta-G solvation = -2724.707432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10679 -40.21605 -37.67764 -35.03493 -34.18826 -31.99509 -31.22952 -30.54949 -27.52590 -24.64290 -23.63370 -22.50061 -21.12648 -19.46605 -18.72142 -17.56917 -17.00625 -16.93824 -16.47108 -16.18719 -15.70419 -15.27082 -14.99267 -14.63308 -14.06619 -13.74321 -13.55527 -13.13474 -12.98629 -12.82475 -12.63756 -12.36223 -11.91628 -11.75731 -11.52783 -11.47765 -10.97015 -10.52559 -9.77188 -9.42414 -8.46902 -6.61730 -0.24249 0.29714 1.26682 1.33122 1.38344 1.40941 2.23659 2.38840 2.72840 2.91336 3.06846 3.46145 3.77584 3.96325 4.01956 4.16879 4.24737 4.36410 4.52486 4.66710 4.90604 4.91387 4.96381 5.13162 5.33578 5.37727 5.40275 5.51046 5.82037 6.00240 6.46794 6.63249 6.82678 7.14815 8.67409 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042448 B = 0.006249 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.475715 B = 4479.547783 C = 4622.980026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.035 3.965 3 Si 0.947 3.053 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.545 4.545 8 H 0.047 0.953 9 C 0.122 3.878 10 H 0.090 0.910 11 C -0.122 4.122 12 C 0.116 3.884 13 C -0.035 4.035 14 C -0.097 4.097 15 C -0.095 4.095 16 C -0.124 4.124 17 C 0.097 3.903 18 O -0.508 6.508 19 C -0.134 4.134 20 N -0.324 5.324 21 O -0.242 6.242 22 H 0.272 0.728 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.151 0.849 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.411 0.589 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.470 -15.149 -3.131 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.583 4.583 8 H 0.065 0.935 9 C 0.065 3.935 10 H 0.108 0.892 11 C -0.161 4.161 12 C -0.073 4.073 13 C -0.036 4.036 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.143 4.143 17 C 0.053 3.947 18 O -0.321 6.321 19 C -0.154 4.154 20 N -0.067 5.067 21 O -0.262 6.262 22 H 0.081 0.919 23 H 0.125 0.875 24 H 0.137 0.863 25 H 0.169 0.831 26 H 0.190 0.810 27 H 0.179 0.821 28 H 0.270 0.730 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.006 -14.173 -3.950 18.374 hybrid contribution -0.924 0.987 0.420 1.415 sum 10.082 -13.186 -3.530 16.970 Atomic orbital electron populations 1.70022 1.08003 1.28683 1.50028 1.25811 0.95448 1.03192 0.92208 0.85684 0.79576 0.78874 0.78707 1.20961 1.20212 1.16884 1.21433 0.90449 0.93827 1.52544 0.93520 1.21871 0.93549 0.92809 0.85236 0.89206 1.22888 1.03426 0.97220 0.92554 1.24631 0.94388 0.93126 0.95182 1.17868 1.03754 0.88965 0.93023 1.21585 0.98078 0.91016 1.01017 1.21383 0.97486 0.97775 0.94575 1.21896 0.99295 0.98792 0.94366 1.18388 1.00208 0.91669 0.84442 1.84767 1.37392 1.95068 1.14888 1.21621 1.00681 0.98581 0.94538 1.77988 1.13426 0.96394 1.18872 1.91065 1.83324 1.24845 1.27016 0.91915 0.87509 0.86327 0.83147 0.80978 0.82111 0.73039 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.96 21.45 0.30 -57.80 15 2 C 0.03 2.06 5.47 84.66 0.46 2.53 15 3 Si 0.95 47.30 26.69 68.60 1.83 49.13 15 4 H -0.28 -14.73 7.11 99.48 0.71 -14.02 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 6 H -0.25 -11.34 6.44 99.48 0.64 -10.70 15 7 C -0.55 -31.51 9.39 25.60 0.24 -31.27 15 8 H 0.05 2.91 7.86 -2.91 -0.02 2.89 15 9 C 0.12 5.89 2.94 30.44 0.09 5.98 15 10 H 0.09 4.11 6.99 -2.38 -0.02 4.09 15 11 C -0.12 -4.57 5.80 30.75 0.18 -4.39 15 12 C 0.12 4.58 7.15 45.77 0.33 4.91 15 13 C -0.03 -1.10 5.87 -20.14 -0.12 -1.21 15 14 C -0.10 -2.21 9.61 22.54 0.22 -2.00 15 15 C -0.09 -1.58 10.02 22.21 0.22 -1.36 15 16 C -0.12 -2.21 9.98 22.42 0.22 -1.98 15 17 C 0.10 2.31 6.70 22.47 0.15 2.46 15 18 O -0.51 -10.59 13.50 -92.53 -1.25 -11.84 15 19 C -0.13 -4.08 9.62 22.64 0.22 -3.87 15 20 N -0.32 -15.47 12.12 -42.22 -0.51 -15.98 15 21 O -0.24 -12.68 10.73 -38.32 -0.41 -13.09 15 22 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 23 H 0.11 3.75 7.59 -2.39 -0.02 3.73 15 24 H 0.12 3.52 8.14 -2.38 -0.02 3.50 15 25 H 0.15 2.84 7.36 -2.91 -0.02 2.82 15 26 H 0.17 1.52 8.06 -2.91 -0.02 1.50 15 27 H 0.16 1.85 8.06 -2.91 -0.02 1.82 15 28 H 0.41 4.63 9.06 -74.06 -0.67 3.96 15 29 H 0.11 3.91 7.83 -2.91 -0.02 3.89 15 Total: -1.00 -76.17 259.48 2.62 -73.55 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.44 Total: 6.24 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 2.21 Total: -30.21 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -0.21 Total: -73.78 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.66 Total: -24.92 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.83 Total: 49.13 kcal Total: -76.17 2.62 -73.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.179 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds