Wall clock time and date at job start Mon Mar 30 2020 03:09:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86796 * 120.00242 * 2 1
4 4 H 1.48504 * 109.47177 * 270.00082 * 3 2 1
5 5 H 1.48502 * 109.47257 * 29.99705 * 3 2 1
6 6 H 1.48500 * 109.47597 * 149.99723 * 3 2 1
7 7 C 1.37882 * 119.99832 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00262 * 0.02562 * 7 2 1
9 9 C 1.50701 * 119.99949 * 179.97438 * 7 2 1
10 10 H 1.09005 * 110.85546 * 56.20071 * 9 7 2
11 11 C 1.54728 * 110.97484 * 180.02562 * 9 7 2
12 12 C 1.51688 * 102.55114 * 93.93405 * 11 9 7
13 13 C 1.47663 * 125.86558 * 195.39396 * 12 11 9
14 14 C 1.39648 * 120.12235 * 359.97438 * 13 12 11
15 15 C 1.37956 * 119.95851 * 180.02562 * 14 13 12
16 16 C 1.38281 * 120.21390 * 0.02562 * 15 14 13
17 17 C 1.38816 * 120.24259 * 359.97438 * 16 15 14
18 18 O 1.35910 * 119.97940 * 179.97438 * 17 16 15
19 19 C 1.38485 * 120.04038 * 0.25375 * 17 16 15
20 20 N 1.29075 * 108.26788 * 15.65171 * 12 11 9
21 21 O 1.41391 * 112.87621 * 359.89175 * 20 12 11
22 22 H 0.96995 * 119.99471 * 0.02562 * 1 2 3
23 23 H 1.09003 * 110.79391 * 335.66813 * 11 9 7
24 24 H 1.09005 * 110.79517 * 212.19692 * 11 9 7
25 25 H 1.08005 * 120.01490 * 0.02562 * 14 13 12
26 26 H 1.08006 * 119.89372 * 180.02562 * 15 14 13
27 27 H 1.07998 * 119.88131 * 179.97438 * 16 15 14
28 28 H 0.96700 * 114.00376 * 90.00022 * 18 17 16
29 29 H 1.07996 * 120.10587 * 179.74538 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5468 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4646 -2.1294 0.0005
9 6 3.5116 -1.1941 0.0000
10 1 3.9000 -0.6269 0.8459
11 6 4.0654 -2.6389 0.0001
12 6 4.2777 -2.9107 -1.4771
13 6 4.4899 -4.2367 -2.0910
14 6 4.5082 -5.3832 -1.2939
15 6 4.7073 -6.6204 -1.8710
16 6 4.8896 -6.7297 -3.2373
17 6 4.8731 -5.5957 -4.0378
18 8 5.0534 -5.7093 -5.3801
19 6 4.6788 -4.3482 -3.4688
20 7 4.2463 -1.7831 -2.1045
21 8 4.0281 -0.6818 -1.2451
22 1 -0.4849 0.8400 -0.0004
23 1 3.3371 -3.3325 0.4204
24 1 5.0093 -2.6915 0.5427
25 1 4.3665 -5.3013 -0.2264
26 1 4.7208 -7.5065 -1.2536
27 1 5.0455 -7.7008 -3.6834
28 1 4.2337 -5.8321 -5.8781
29 1 4.6698 -3.4649 -4.0901
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260438035.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:45
Heat of formation + Delta-G solvation = -23.370624 kcal
Electronic energy + Delta-G solvation = -15512.951863 eV
Core-core repulsion = 12788.244431 eV
Total energy + Delta-G solvation = -2724.707432 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 233.084 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.10679 -40.21605 -37.67764 -35.03493 -34.18826 -31.99509 -31.22952 -30.54949
-27.52590 -24.64290 -23.63370 -22.50061 -21.12648 -19.46605 -18.72142 -17.56917
-17.00625 -16.93824 -16.47108 -16.18719 -15.70419 -15.27082 -14.99267 -14.63308
-14.06619 -13.74321 -13.55527 -13.13474 -12.98629 -12.82475 -12.63756 -12.36223
-11.91628 -11.75731 -11.52783 -11.47765 -10.97015 -10.52559 -9.77188 -9.42414
-8.46902 -6.61730 -0.24249 0.29714 1.26682 1.33122 1.38344 1.40941
2.23659 2.38840 2.72840 2.91336 3.06846 3.46145 3.77584 3.96325
4.01956 4.16879 4.24737 4.36410 4.52486 4.66710 4.90604 4.91387
4.96381 5.13162 5.33578 5.37727 5.40275 5.51046 5.82037 6.00240
6.46794 6.63249 6.82678 7.14815 8.67409
Molecular weight = 233.08amu
Principal moments of inertia in cm(-1)
A = 0.042448 B = 0.006249 C = 0.006055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.475715 B = 4479.547783 C = 4622.980026
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.035 3.965
3 Si 0.947 3.053
4 H -0.283 1.283
5 H -0.276 1.276
6 H -0.245 1.245
7 C -0.545 4.545
8 H 0.047 0.953
9 C 0.122 3.878
10 H 0.090 0.910
11 C -0.122 4.122
12 C 0.116 3.884
13 C -0.035 4.035
14 C -0.097 4.097
15 C -0.095 4.095
16 C -0.124 4.124
17 C 0.097 3.903
18 O -0.508 6.508
19 C -0.134 4.134
20 N -0.324 5.324
21 O -0.242 6.242
22 H 0.272 0.728
23 H 0.107 0.893
24 H 0.119 0.881
25 H 0.151 0.849
26 H 0.173 0.827
27 H 0.161 0.839
28 H 0.411 0.589
29 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.470 -15.149 -3.131 18.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.167 4.167
3 Si 0.772 3.228
4 H -0.210 1.210
5 H -0.202 1.202
6 H -0.169 1.169
7 C -0.583 4.583
8 H 0.065 0.935
9 C 0.065 3.935
10 H 0.108 0.892
11 C -0.161 4.161
12 C -0.073 4.073
13 C -0.036 4.036
14 C -0.117 4.117
15 C -0.112 4.112
16 C -0.143 4.143
17 C 0.053 3.947
18 O -0.321 6.321
19 C -0.154 4.154
20 N -0.067 5.067
21 O -0.262 6.262
22 H 0.081 0.919
23 H 0.125 0.875
24 H 0.137 0.863
25 H 0.169 0.831
26 H 0.190 0.810
27 H 0.179 0.821
28 H 0.270 0.730
29 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 11.006 -14.173 -3.950 18.374
hybrid contribution -0.924 0.987 0.420 1.415
sum 10.082 -13.186 -3.530 16.970
Atomic orbital electron populations
1.70022 1.08003 1.28683 1.50028 1.25811 0.95448 1.03192 0.92208
0.85684 0.79576 0.78874 0.78707 1.20961 1.20212 1.16884 1.21433
0.90449 0.93827 1.52544 0.93520 1.21871 0.93549 0.92809 0.85236
0.89206 1.22888 1.03426 0.97220 0.92554 1.24631 0.94388 0.93126
0.95182 1.17868 1.03754 0.88965 0.93023 1.21585 0.98078 0.91016
1.01017 1.21383 0.97486 0.97775 0.94575 1.21896 0.99295 0.98792
0.94366 1.18388 1.00208 0.91669 0.84442 1.84767 1.37392 1.95068
1.14888 1.21621 1.00681 0.98581 0.94538 1.77988 1.13426 0.96394
1.18872 1.91065 1.83324 1.24845 1.27016 0.91915 0.87509 0.86327
0.83147 0.80978 0.82111 0.73039 0.86774
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.10 13.96 21.45 0.30 -57.80 15
2 C 0.03 2.06 5.47 84.66 0.46 2.53 15
3 Si 0.95 47.30 26.69 68.60 1.83 49.13 15
4 H -0.28 -14.73 7.11 99.48 0.71 -14.02 15
5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15
6 H -0.25 -11.34 6.44 99.48 0.64 -10.70 15
7 C -0.55 -31.51 9.39 25.60 0.24 -31.27 15
8 H 0.05 2.91 7.86 -2.91 -0.02 2.89 15
9 C 0.12 5.89 2.94 30.44 0.09 5.98 15
10 H 0.09 4.11 6.99 -2.38 -0.02 4.09 15
11 C -0.12 -4.57 5.80 30.75 0.18 -4.39 15
12 C 0.12 4.58 7.15 45.77 0.33 4.91 15
13 C -0.03 -1.10 5.87 -20.14 -0.12 -1.21 15
14 C -0.10 -2.21 9.61 22.54 0.22 -2.00 15
15 C -0.09 -1.58 10.02 22.21 0.22 -1.36 15
16 C -0.12 -2.21 9.98 22.42 0.22 -1.98 15
17 C 0.10 2.31 6.70 22.47 0.15 2.46 15
18 O -0.51 -10.59 13.50 -92.53 -1.25 -11.84 15
19 C -0.13 -4.08 9.62 22.64 0.22 -3.87 15
20 N -0.32 -15.47 12.12 -42.22 -0.51 -15.98 15
21 O -0.24 -12.68 10.73 -38.32 -0.41 -13.09 15
22 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15
23 H 0.11 3.75 7.59 -2.39 -0.02 3.73 15
24 H 0.12 3.52 8.14 -2.38 -0.02 3.50 15
25 H 0.15 2.84 7.36 -2.91 -0.02 2.82 15
26 H 0.17 1.52 8.06 -2.91 -0.02 1.50 15
27 H 0.16 1.85 8.06 -2.91 -0.02 1.82 15
28 H 0.41 4.63 9.06 -74.06 -0.67 3.96 15
29 H 0.11 3.91 7.83 -2.91 -0.02 3.89 15
Total: -1.00 -76.17 259.48 2.62 -73.55
By element:
Atomic # 1 Polarization: 5.79 SS G_CDS: 0.44 Total: 6.24 kcal
Atomic # 6 Polarization: -32.42 SS G_CDS: 2.21 Total: -30.21 kcal
Atomic # 7 Polarization: -73.57 SS G_CDS: -0.21 Total: -73.78 kcal
Atomic # 8 Polarization: -23.26 SS G_CDS: -1.66 Total: -24.92 kcal
Atomic # 14 Polarization: 47.30 SS G_CDS: 1.83 Total: 49.13 kcal
Total: -76.17 2.62 -73.55 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260438035.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.179 kcal
(2) G-P(sol) polarization free energy of solvation -76.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds