Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47227 * 270.00078 * 3 2 1 5 5 H 1.48503 * 109.46650 * 29.99727 * 3 2 1 6 6 H 1.48500 * 109.47301 * 149.99775 * 3 2 1 7 7 C 1.37878 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00293 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.85864 * 297.65365 * 9 7 2 11 11 C 1.54888 * 111.17181 * 173.84032 * 9 7 2 12 12 C 1.51685 * 102.48149 * 266.35658 * 11 9 7 13 13 C 1.47659 * 125.86685 * 164.55009 * 12 11 9 14 14 C 1.39641 * 120.11750 * 359.71323 * 13 12 11 15 15 C 1.37960 * 119.95938 * 179.97438 * 14 13 12 16 16 C 1.38282 * 120.20812 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.24798 * 359.97438 * 16 15 14 18 18 O 1.35915 * 119.98175 * 179.97438 * 17 16 15 19 19 C 1.38485 * 120.03510 * 0.25353 * 17 16 15 20 20 N 1.29083 * 108.27208 * 344.28363 * 12 11 9 21 21 O 1.41393 * 112.87287 * 359.91043 * 20 12 11 22 22 H 0.97006 * 120.00533 * 359.97438 * 1 2 3 23 23 H 1.09001 * 110.90752 * 148.08107 * 11 9 7 24 24 H 1.08994 * 110.74254 * 24.56689 * 11 9 7 25 25 H 1.08000 * 120.02550 * 0.02562 * 14 13 12 26 26 H 1.08000 * 119.89868 * 180.02562 * 15 14 13 27 27 H 1.08004 * 119.87931 * 179.97438 * 16 15 14 28 28 H 0.96705 * 113.99582 * 90.00111 * 18 17 16 29 29 H 1.07995 * 120.10352 * 179.74589 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8993 -0.7218 -0.9027 11 6 4.0711 -2.6298 0.1557 12 6 4.2779 -2.7403 1.6543 13 6 4.4911 -3.9919 2.4082 14 6 4.5092 -5.2179 1.7401 15 6 4.7093 -6.3853 2.4476 16 6 4.8915 -6.3458 3.8178 17 6 4.8751 -5.1317 4.4908 18 8 5.0543 -5.0993 5.8377 19 6 4.6704 -3.9542 3.7912 20 7 4.2410 -1.5518 2.1567 21 8 4.0281 -0.5496 1.1823 22 1 -0.4851 0.8400 0.0004 23 1 5.0173 -2.7381 -0.3745 24 1 3.3460 -3.3663 -0.1903 25 1 4.3676 -5.2524 0.6700 26 1 4.7235 -7.3329 1.9298 27 1 5.0473 -7.2629 4.3666 28 1 5.9783 -5.0127 6.1095 29 1 4.6533 -3.0095 4.3142 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260438037.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = -21.845774 kcal Electronic energy + Delta-G solvation = -15540.265117 eV Core-core repulsion = 12815.623807 eV Total energy + Delta-G solvation = -2724.641310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.08589 -40.20417 -37.67722 -35.00964 -34.16458 -31.95679 -31.21797 -30.53923 -27.50085 -24.63781 -23.62381 -22.48148 -21.13472 -19.43271 -18.65092 -17.57824 -17.00746 -16.91848 -16.53119 -16.16963 -15.59678 -15.35029 -14.99937 -14.60545 -13.97309 -13.65143 -13.59672 -13.12662 -13.01463 -12.66872 -12.61388 -12.29279 -12.13623 -11.69547 -11.51763 -11.29754 -10.89038 -10.50123 -9.76338 -9.40238 -8.44846 -6.59631 -0.22347 0.30442 1.28845 1.30811 1.40812 1.59701 2.32178 2.45063 2.75389 2.93103 3.06247 3.47557 3.78089 3.98240 4.02913 4.17591 4.25605 4.38644 4.53385 4.68080 4.91937 4.93188 4.98258 5.15246 5.35043 5.38785 5.40863 5.52055 5.83238 6.00941 6.48120 6.66907 6.85194 7.17835 8.69323 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.041409 B = 0.006371 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.025959 B = 4393.917873 C = 4557.127272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.031 3.969 3 Si 0.934 3.066 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.228 1.228 7 C -0.550 4.550 8 H 0.044 0.956 9 C 0.125 3.875 10 H 0.089 0.911 11 C -0.122 4.122 12 C 0.115 3.885 13 C -0.034 4.034 14 C -0.098 4.098 15 C -0.095 4.095 16 C -0.126 4.126 17 C 0.098 3.902 18 O -0.508 6.508 19 C -0.134 4.134 20 N -0.331 5.331 21 O -0.229 6.229 22 H 0.270 0.730 23 H 0.120 0.880 24 H 0.103 0.897 25 H 0.150 0.850 26 H 0.172 0.828 27 H 0.161 0.839 28 H 0.411 0.589 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 -14.083 4.413 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.152 1.152 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.068 3.932 10 H 0.106 0.894 11 C -0.161 4.161 12 C -0.075 4.075 13 C -0.036 4.036 14 C -0.118 4.118 15 C -0.112 4.112 16 C -0.145 4.145 17 C 0.053 3.947 18 O -0.322 6.322 19 C -0.155 4.155 20 N -0.073 5.073 21 O -0.248 6.248 22 H 0.079 0.921 23 H 0.138 0.862 24 H 0.121 0.879 25 H 0.168 0.832 26 H 0.190 0.810 27 H 0.179 0.821 28 H 0.270 0.730 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.592 -13.129 5.303 19.628 hybrid contribution -0.117 0.965 -0.678 1.185 sum 13.476 -12.164 4.625 18.734 Atomic orbital electron populations 1.70036 1.08262 1.28633 1.50183 1.25848 0.95421 1.03528 0.92150 0.85945 0.80936 0.78136 0.79244 1.18510 1.21432 1.15202 1.21434 0.90613 0.93732 1.52980 0.93811 1.21759 0.93365 0.91053 0.86976 0.89396 1.22903 1.03329 0.98207 0.91623 1.24592 0.94642 0.92807 0.95425 1.17887 1.03607 0.89910 0.92170 1.21578 0.98133 0.90434 1.01659 1.21379 0.97518 0.98911 0.93437 1.21890 0.99715 0.97744 0.95115 1.18392 1.00963 0.91981 0.83340 1.84796 1.34078 1.95818 1.17459 1.21617 1.01270 0.99138 0.93436 1.77970 1.13080 0.99502 1.16776 1.91312 1.83255 1.26204 1.24065 0.92108 0.86184 0.87906 0.83214 0.81032 0.82144 0.72986 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.27 13.96 21.45 0.30 -58.97 15 2 C 0.03 1.87 5.47 84.66 0.46 2.33 15 3 Si 0.93 46.50 27.15 68.60 1.86 48.36 15 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 15 5 H -0.29 -14.31 7.11 99.48 0.71 -13.61 15 6 H -0.23 -11.35 5.37 99.48 0.53 -10.82 15 7 C -0.55 -32.04 9.45 25.60 0.24 -31.79 15 8 H 0.04 2.76 7.85 -2.91 -0.02 2.74 15 9 C 0.12 6.00 2.97 30.49 0.09 6.09 15 10 H 0.09 3.90 7.74 -2.39 -0.02 3.88 15 11 C -0.12 -4.55 5.82 30.81 0.18 -4.37 15 12 C 0.11 4.53 7.15 45.77 0.33 4.86 15 13 C -0.03 -1.09 5.87 -20.14 -0.12 -1.21 15 14 C -0.10 -2.27 9.61 22.54 0.22 -2.05 15 15 C -0.09 -1.61 10.03 22.21 0.22 -1.39 15 16 C -0.13 -2.26 9.98 22.42 0.22 -2.03 15 17 C 0.10 2.34 6.70 22.47 0.15 2.49 15 18 O -0.51 -10.66 13.50 -92.59 -1.25 -11.91 15 19 C -0.13 -4.12 9.62 22.64 0.22 -3.90 15 20 N -0.33 -15.71 12.11 -42.22 -0.51 -16.22 15 21 O -0.23 -11.80 9.27 -38.32 -0.36 -12.16 15 22 H 0.27 16.03 8.31 -92.70 -0.77 15.26 15 23 H 0.12 3.49 8.14 -2.39 -0.02 3.47 15 24 H 0.10 3.66 7.57 -2.39 -0.02 3.64 15 25 H 0.15 2.88 7.36 -2.91 -0.02 2.86 15 26 H 0.17 1.57 8.06 -2.91 -0.02 1.54 15 27 H 0.16 1.88 8.06 -2.91 -0.02 1.86 15 28 H 0.41 4.20 9.06 -74.05 -0.67 3.53 15 29 H 0.11 3.93 7.83 -2.91 -0.02 3.91 15 Total: -1.00 -77.46 258.22 2.60 -74.86 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.34 Total: 7.02 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 2.22 Total: -30.97 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -0.21 Total: -75.19 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -1.61 Total: -24.07 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.86 Total: 48.36 kcal Total: -77.46 2.60 -74.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438037.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.014 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds