Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46429 * 2 1 4 4 O 1.20900 * 123.47984 * 269.70194 * 3 2 1 5 5 C 1.34445 * 112.76954 * 179.86335 * 4 3 2 6 6 O 1.21702 * 127.43000 * 180.17891 * 5 4 3 7 7 C 1.47022 * 105.13561 * 0.38257 * 5 4 3 8 8 C 1.38165 * 136.21493 * 179.79875 * 7 5 4 9 9 C 1.40659 * 119.12517 * 179.97438 * 8 7 5 10 10 C 1.41217 * 120.10394 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00452 * 154.66146 * 10 9 8 12 12 C 1.39827 * 119.99721 * 334.66940 * 10 9 8 13 13 N 1.30923 * 119.99846 * 342.86644 * 12 10 9 14 14 Si 1.86803 * 120.00243 * 162.87184 * 12 10 9 15 15 H 1.48499 * 109.46905 * 59.99517 * 14 12 10 16 16 H 1.48500 * 109.47187 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46682 * 299.99903 * 14 12 10 18 18 C 1.41210 * 119.79899 * 0.02562 * 9 8 7 19 19 C 1.36006 * 120.74036 * 359.97438 * 18 9 8 20 20 C 1.36358 * 123.47567 * 90.00148 * 3 2 1 21 21 H 1.08998 * 109.47170 * 60.00113 * 1 2 3 22 22 H 1.09002 * 109.46513 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47240 * 299.99818 * 1 2 3 24 24 H 1.08995 * 109.47383 * 240.00699 * 2 1 3 25 25 H 1.08998 * 109.47170 * 119.99886 * 2 1 3 26 26 H 1.07998 * 120.43376 * 0.03603 * 8 7 5 27 27 H 0.97002 * 119.99950 * 180.02562 * 13 12 10 28 28 H 1.07993 * 119.62998 * 180.02562 * 18 9 8 29 29 H 1.07996 * 119.86375 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 8 2.2454 2.0084 -1.0084 5 6 2.6816 3.2553 -0.7586 6 8 2.9840 4.1098 -1.5707 7 6 2.7191 3.3624 0.7073 8 6 3.0624 4.3337 1.6280 9 6 2.9588 4.0433 3.0004 10 6 3.3038 5.0209 3.9593 11 1 2.8666 4.9872 4.9462 12 6 4.2113 6.0327 3.6308 13 7 4.9886 5.9007 2.5856 14 14 4.3146 7.5725 4.6832 15 1 4.6815 7.1987 6.0727 16 1 5.3469 8.4838 4.1272 17 1 2.9977 8.2590 4.6866 18 6 2.5087 2.7711 3.4164 19 6 2.1725 1.8200 2.5042 20 6 2.2689 2.0904 1.1374 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.4049 5.3034 1.2983 27 1 5.6185 6.6024 2.3580 28 1 2.4298 2.5512 4.4708 29 1 1.8296 0.8520 2.8381 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = 14.571113 kcal Electronic energy + Delta-G solvation = -15968.059920 eV Core-core repulsion = 13244.997764 eV Total energy + Delta-G solvation = -2723.062155 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.13200 -39.29481 -39.04726 -35.92864 -35.16438 -32.65312 -31.40307 -30.09667 -27.79151 -24.79869 -24.45306 -23.62440 -21.13426 -19.76521 -18.97735 -18.54702 -18.43458 -16.90843 -16.43556 -16.23464 -15.18839 -14.98220 -14.86804 -14.73417 -14.37436 -13.79958 -13.44025 -13.34998 -12.89724 -12.84361 -12.78238 -12.35640 -12.21094 -12.07395 -11.73398 -11.12808 -11.02306 -10.30214 -9.81380 -8.64262 -8.42155 -6.18500 0.06645 0.87525 1.11672 1.41471 1.50276 1.54239 1.63050 2.23438 2.49043 2.68207 3.56354 3.59410 3.96105 4.13332 4.20367 4.43852 4.47749 4.77803 4.87496 4.94873 4.95399 5.23943 5.31588 5.39635 5.45451 5.56171 5.91107 6.09086 6.18509 6.42547 6.54002 6.90165 6.94303 7.28134 8.37962 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.007597 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.836164 B = 3684.944052 C = 4262.265188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 N -0.448 5.448 4 O -0.064 6.064 5 C 0.470 3.530 6 O -0.522 6.522 7 C -0.264 4.264 8 C -0.097 4.097 9 C 0.043 3.957 10 C -0.490 4.490 11 H 0.091 0.909 12 C 0.028 3.972 13 N -0.838 5.838 14 Si 0.981 3.019 15 H -0.252 1.252 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.129 4.129 19 C -0.114 4.114 20 C 0.063 3.937 21 H 0.046 0.954 22 H 0.110 0.890 23 H 0.055 0.945 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.284 0.716 28 H 0.139 0.861 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 -10.988 1.634 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 N -0.197 5.197 4 O -0.077 6.077 5 C 0.320 3.680 6 O -0.415 6.415 7 C -0.270 4.270 8 C -0.118 4.118 9 C 0.039 3.961 10 C -0.521 4.521 11 H 0.110 0.890 12 C -0.185 4.185 13 N -0.466 5.466 14 Si 0.802 3.198 15 H -0.175 1.175 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.148 4.148 19 C -0.136 4.136 20 C -0.039 4.039 21 H 0.065 0.935 22 H 0.128 0.872 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.206 -10.831 0.796 12.508 hybrid contribution 0.497 1.319 -0.164 1.419 sum -5.709 -9.512 0.632 11.112 Atomic orbital electron populations 1.22282 0.94080 1.04419 1.02153 1.22195 0.95587 0.73458 1.06493 1.43191 1.69762 1.12512 0.94222 1.84110 1.74450 1.26362 1.22815 1.21034 0.77630 0.79588 0.89759 1.90850 1.52601 1.40162 1.57868 1.20364 1.15196 0.98962 0.92521 1.20440 1.02247 0.96889 0.92228 1.17847 0.93380 0.93441 0.91383 1.19692 1.23029 1.09377 0.99963 0.89048 1.26778 0.93034 1.02268 0.96440 1.69922 1.16505 1.33880 1.26245 0.85257 0.78769 0.76685 0.79065 1.17550 1.20321 1.18613 1.21204 1.02166 0.91910 0.99554 1.19619 1.06118 1.01235 0.86612 1.18722 1.04280 0.90772 0.90122 0.93476 0.87199 0.92628 0.87532 0.85821 0.88613 0.90526 0.84345 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 10.24 71.98 0.74 -2.28 15 2 C 0.14 2.86 6.86 86.38 0.59 3.45 15 3 N -0.45 -15.64 3.30 -339.14 -1.12 -16.75 15 4 O -0.06 -2.63 10.83 90.81 0.98 -1.65 15 5 C 0.47 23.54 8.97 70.12 0.63 24.17 15 6 O -0.52 -29.04 18.05 18.69 0.34 -28.70 15 7 C -0.26 -13.43 6.53 -20.16 -0.13 -13.57 15 8 C -0.10 -5.36 8.72 22.84 0.20 -5.16 15 9 C 0.04 2.19 5.57 -21.23 -0.12 2.07 15 10 C -0.49 -25.15 9.04 23.39 0.21 -24.94 15 11 H 0.09 4.30 7.90 -2.91 -0.02 4.28 15 12 C 0.03 1.43 5.14 85.21 0.44 1.86 15 13 N -0.84 -45.90 10.96 21.81 0.24 -45.67 15 14 Si 0.98 38.42 29.59 68.60 2.03 40.45 15 15 H -0.25 -9.19 7.11 99.48 0.71 -8.48 15 16 H -0.28 -10.74 7.11 99.48 0.71 -10.03 15 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 18 C -0.13 -5.33 9.69 22.48 0.22 -5.11 15 19 C -0.11 -4.10 9.81 22.09 0.22 -3.88 15 20 C 0.06 2.58 6.83 39.62 0.27 2.85 15 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.11 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.12 1.93 7.94 -2.39 -0.02 1.91 15 26 H 0.10 5.86 6.21 -2.91 -0.02 5.84 15 27 H 0.28 14.45 8.30 -92.71 -0.77 13.68 15 28 H 0.14 4.89 8.06 -2.91 -0.02 4.86 15 29 H 0.16 3.93 7.98 -2.91 -0.02 3.91 15 Total: -1.00 -68.19 260.38 6.90 -61.29 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.17 Total: 11.56 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 3.26 Total: -20.54 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.88 Total: -62.42 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: 1.32 Total: -30.35 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -68.19 6.90 -61.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.863 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds